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ShobiStassen / VIA

trajectory inference
https://pyvia.readthedocs.io/en/latest/
MIT License
86 stars 21 forks source link

beginner problems? #40

Closed dxl3742 closed 1 year ago

dxl3742 commented 1 year ago

super new beginner to python: I got this error after running the test_pyVIA.py, I havent changed anything in the code except for the folder directories: draw_trajectory_gams(via_coarse=v0, via_fine=v0, embedding = embedding) TypeError: draw_trajectory_gams() got an unexpected keyword argument 'via_coarse'

and this error after running the basic workflow tutorial: fig, ax, ax2= draw_piechart_graph(via0=v0, type_data='pt', title='Toy multifurcation', cmap='viridis', ax_text= True, gene_exp='', alpha_edge=0.5, linewidth_edge=1.5, edge_color='green', headwidth_arrow=0.2) Traceback (most recent call last): File "", line 1, in TypeError: draw_piechart_graph() got an unexpected keyword argument 'via0'

dxl3742 commented 1 year ago

Hi Shobi, any help would be greatly appreciated, thanks in advance!

ShobiStassen commented 1 year ago

Hi @dxl3742 Melanie,

I'll reply in more detail shortly but can you change via0=v0 to via_object=v0. Similarly please try change via_coarse to via_object = v0

I changed some of the parameter names recently and haven't updated the tutorials but if you look at the API section in read the docs, you can usually find the parameter names

ShobiStassen commented 1 year ago

@dxl3742 link to API section