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ShobiStassen / VIA

trajectory inference
https://pyvia.readthedocs.io/en/latest/
MIT License
76 stars 20 forks source link

ATAC tutorial #57

Open revolvefire opened 4 months ago

revolvefire commented 4 months ago

Congratulations on the wonderful-looking update on VIA.

This is my first time trying to use VIA (or StaVia), and it seems like the tutorial for [scATAC-seq Hematopoiesis] link is not working correctly yet. Will it be available soon? I am mostly interested in scATAC-based trajectory analysis and also wonder whether typically preprocessed scATAC data using Signac or ArchR would be applicable.

Thanks!

ShobiStassen commented 4 months ago

Hi!

Thanks so much for reaching out. Let me check and get back to you in a couple of days. We are in the process of updating the tutorials to reflect the changes in the newer versions!

On Thu, 15 Feb 2024, 12:35 revolvefire, @.***> wrote:

Congratulations on the wonderful-looking update on VIA.

This is my first time trying to use VIA (or StaVia), and it seems like the tutorial for [scATAC-seq Hematopoiesis] link is not working correctly yet. Will it be available soon? I am mostly interested in scATAC-based trajectory analysis and also wonder whether typically preprocessed scATAC data using Signac or ArchR would be applicable.

Thanks!

— Reply to this email directly, view it on GitHub https://github.com/ShobiStassen/VIA/issues/57, or unsubscribe https://github.com/notifications/unsubscribe-auth/AISI4SHGZ2FLTL3ZD5F5INDYTWGC7AVCNFSM6AAAAABDJSE2OSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGEZTKNRRHA3DQNI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

ShobiStassen commented 4 months ago

@revolvefire Hi, i've put up a simple scATAC-seq tutorial for you, hopefully it helps get you started

revolvefire commented 4 months ago

@ShobiStassen

Thank you so much for the prompt update! I'll start looking into it! Thank you!