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ShobiStassen / VIA

trajectory inference
https://pyvia.readthedocs.io/en/latest/
MIT License
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VIA function #62

Open feasiblee opened 4 months ago

feasiblee commented 4 months ago

Hello, do you need to de-batch the merged data and then use the VIA function?

ShobiStassen commented 4 months ago

Hi, you can preprocess your data and pass it through all at once. Generally good to do pca (depends on what your features are though)

feasiblee commented 4 months ago

Thanks, my data involves single cell data from several periods, and there are duplicates in each period.