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ShouWenWang-Lab / cospar

Further development of CoSpar happens here!
MIT License
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DARLIN data not accessible #8

Closed LouisFaure closed 6 months ago

LouisFaure commented 6 months ago

Hi, I would like to reproduce the notebook focusing on DARLIN data, however, I cannot download the anndata. Could you enable access to it?

Many thanks!

ShouWenWang commented 6 months ago

Sorry, there are some issue with our downloading server. Here is a link that can download the file for now. We will fix this problem soon.

https://westlakeu-my.sharepoint.com/:u:/g/personal/wangshouwen_westlake_edu_cn/ETiN1opaD-lFsmUOelCqXcEBU3tGJNNtdnYCREtMDqUqfA?e=BzHhr3

Once downloading the file, just run this command to load the adata

cs.hf.read('path/to/tissue_adata_refined_20221106_joint.h5ad')
ShouWenWang commented 6 months ago

Data downloading has been fixed. Please use the latest cospar code.

zsteve commented 3 months ago

FYI I tried to use the same function from the current github version of cospar (I installed using pip install from git). I got a 404 error from the westlake server.

ShouWenWang commented 3 months ago

We will fix it. There is also a download link in the notebook. That should work

―― Shou-Wen Wang, PhD Principal Investigator School of Life Sciences | School of Sciences Westlake University Shilongshan ST #18, Xihu, Hangzhou, Zhejiang https://www.shouwenwang-lab.com/

From: Stephen Zhang @.> Sent: Wednesday, May 22, 2024 2:14:06 AM To: ShouWenWang-Lab/cospar @.> Cc: Shouwen WANG 王寿文 @.>; State change @.> Subject: Re: [ShouWenWang-Lab/cospar] DARLIN data not accessible (Issue #8)

FYI I tried to use the same function from the current github version of cospar (I installed using pip install from git). I got a 404 error from the westlake server.

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ShouWenWang commented 3 months ago

It is fixed in the latest CoSpar commit.