ShouWenWang-Lab / cospar

Further development of CoSpar happens here!
MIT License
8 stars 2 forks source link

URL error issue #9

Closed Zhklu2003 closed 2 months ago

Zhklu2003 commented 3 months ago

I have downloaded the package and try below 2 lines of codes:

import cospar as cs adata_orig = cs.datasets.hematopoiesis()

Then I get this URL error.

URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1006)>

Could you give me some advice? Thanks.

ShouWenWang commented 3 months ago

Sorry for the inconvenience. We are working to resolve the issue. At the same time, you can use the following links to directly download the data.

DARLIN data (Li et.al., 2023) https://westlakeu-my.sharepoint.com/:u:/g/personal/wangshouwen_westlake_edu_cn/ETiN1opaD-lFsmUOelCqXcEBU3tGJNNtdnYCREtMDqUqfA?e=vx7Ubt

Reprogramming dataset (Biddy et.al. 2018) https://westlakeu-my.sharepoint.com/:u:/g/personal/wangshouwen_westlake_edu_cn/EZULpRrsdZJKtxlYz_hZpI4BcNwEtu26K1DVhWhSO32ONQ?e=hO2cdW

Hematopoietic (LARRY) datasets with only clonally labeled cells (Weinreb et.al., 2020) https://westlakeu-my.sharepoint.com/:u:/g/personal/wangshouwen_westlake_edu_cn/ERmTryFAw7pPnABBZWNdhJUBe2UDfOIEpYBeU4qTcq7Nfg?e=LeGFGW

Sub-sampled hematopoietic (LARRY) datasets with only clonally labeled cells (Weinreb et.al., 2020) https://westlakeu-my.sharepoint.com/:u:/g/personal/wangshouwen_westlake_edu_cn/EaaQVF4tg4dMitqmjgKkHMYBm06PCs6K6D-ZAm0WGX4KZA?e=Ht48On

Lung dataset https://westlakeu-my.sharepoint.com/:u:/g/personal/wangshouwen_westlake_edu_cn/EaD0r9Rd6NdGrVyhEnAO8KEB40YzdiePvPRjd1jtEY6evQ?e=rTJhSf

Zhklu2003 commented 3 months ago

Thanks!

ShouWenWang commented 3 months ago

Problem fixed in the latest cospar on the github.