Fix l1, l2, u1, u2

[talismanbrandi]

@ShreyasDasari l1, l2, v1, v2 should be coordinates and not distances. Please make the following changes:

l1 to start - min(100, half intron length) l2 to start + min(100, half exon length) u1 to end - min(100, half exon length) u2 to end + min(100, half intron length)

with the constraint that l1 for the leftmost exon in a transcript is 0 and v2 for the rightmost exon in a transcript is 0.

Also, please make sure you have applied the above formula correctly.

Please let me know if you have questions.

[ShreyasDasari]

Dear @talismanbrandi,

I understand the changes that are required and I’m working on it to make the necessary adjustments! Thank you so much for reviewing the files closely, I will update the repo with necessary changes.

Best regards, Shreyas Dasari

Get Outlook for iOShttps://aka.ms/o0ukef

---

From: Ayan Paul @.> Sent: Sunday, September 24, 2023 3:53:08 PM To: ShreyasDasari/BioInformatics-and-Machine-learning-Internship @.> Cc: Shreyas Madhusudan Dasari @.>; Assign @.> Subject: Re: [ShreyasDasari/BioInformatics-and-Machine-learning-Internship] Fix l1, l2, u1, u2 (Issue #2)

Assigned #2https://github.com/ShreyasDasari/BioInformatics-and-Machine-learning-Internship/issues/2 to @ShreyasDasarihttps://github.com/ShreyasDasari.

— Reply to this email directly, view it on GitHubhttps://github.com/ShreyasDasari/BioInformatics-and-Machine-learning-Internship/issues/2#event-10455851205, or unsubscribehttps://github.com/notifications/unsubscribe-auth/A3IGJOYANR3QN5DUQRTIRALX4CFSJANCNFSM6AAAAAA5FET5D4. You are receiving this because you were assigned.Message ID: @.***>

[ShreyasDasari]

Dear @talismanbrandi,

I've made the necessary adjustments to the code, replacing the distances of L1, L2, U1, and U2 with their respective coordinates. Could you please take a look and review the code. Thank you!

Best Regards, Shreyas Dasari