Open talismanbrandi opened 1 year ago
Dear @talismanbrandi,
I understand the changes that are required and I’m working on it to make the necessary adjustments! Thank you so much for reviewing the files closely, I will update the repo with necessary changes.
Best regards, Shreyas Dasari
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Dear @talismanbrandi,
I've made the necessary adjustments to the code, replacing the distances of L1, L2, U1, and U2 with their respective coordinates. Could you please take a look and review the code. Thank you!
Best Regards, Shreyas Dasari
@ShreyasDasari l1, l2, v1, v2 should be coordinates and not distances. Please make the following changes:
l1 to start - min(100, half intron length) l2 to start + min(100, half exon length) u1 to end - min(100, half exon length) u2 to end + min(100, half intron length)
with the constraint that l1 for the leftmost exon in a transcript is 0 and v2 for the rightmost exon in a transcript is 0.
Also, please make sure you have applied the above formula correctly.
Please let me know if you have questions.