data.cpp:551: void genome::vcfsLoad(const std::vector<std::__cxx11::basic_string<char> >&): Assertion `idContigFileCheck[curID].count(*it) == 0' failed

Shuhua-Group / ArchaicSeeker2.0

ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.

GNU General Public License v3.0

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data.cpp:551: void genome::vcfsLoad(const std::vector<std::__cxx11::basic_string<char> >&): Assertion `idContigFileCheck[curID].count(*it) == 0' failed #4

Closed LDS-axel closed 10 months ago

LDS-axel commented 1 year ago

I have keep only biallelic SNPs and sort all the position according to physical location, why error occurs?

Zhang-Rui-2018 commented 1 year ago

Please check your population annotation file, like the Individual ID, Population ID, and the label of ArchaicSeekerPop. This error message means that the sample size of certain population is zero.

LDS-axel commented 1 year ago

Thank you for your kind help, problem has been resolved