How should I process the Archaic Variants datasets? the size of Archaic vcf file provided by example seems much smaller than that from 1000 genome

Shuhua-Group / ArchaicSeeker2.0

ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.

GNU General Public License v3.0

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How should I process the Archaic Variants datasets? the size of Archaic vcf file provided by example seems much smaller than that from 1000 genome #5

Closed LDS-axel closed 10 months ago

LDS-axel commented 1 year ago

Zhang-Rui-2018 commented 1 year ago

These data has been combined with KGP which means the remaining physical positions are the intersection of archaic data and KGP data.