Getting an error - Githubissues

SiYangming / IMvigor210CoreBiologies

http://research-pub.gene.com/IMvigor210CoreBiologies/

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Getting an error #3

Open nileshgardi2688 opened 1 month ago

nileshgardi2688 commented 1 month ago

I installed the IMvigor210CoreBiologies package and want to access the count data from the study. The command "data(cds)" works file. I understand that cds is DESeq object. However when i am accessing the data using script "head(counts(cds))", i am getting a following error.

Error: unable to find an inherited method for function ‘counts’ for signature ‘object = "CountDataSet"’

I am unable to understand the error. Kindly help. I am using R 4.4 version.

SiYangming commented 1 month ago

Install DESeq from https://github.com/SiYangming/DESeq/releases/tag/v1.39.0, then run again