[KeyError] 'name'

[xfuren]

dcmrtstruct2nii/adapters/convert/rtstructcontour2mask.py, line 29, in convert:

logging.info(f'Skipping contour {contour["name"]}, unsupported type: {contour["type"]}')

It should be noted that contour is actually sequence, so it only has keys 'type' and 'points'. This line will always raise exception of [KeyError] 'name'.

[Sikerdebaard]

This should not be the case as this specific function uses an intermediate format generated by rtstructinputadapter.py.

Did you run into this exception? If so, rtstructinputadapter.py was probably unable to extract the name of the structure from the rtstruct file, meaning you have an unnamed structure in your rtstruct file.

[xfuren]

BTW, your code should be able to support Contour Geometric Type 'INTERPOLATED_PLANAR' as well. Right?

ref:

https://github.com/jmil/osirix/blob/master/osirix/DCMPix.m

[xfuren]

I ran into this exception. I print contour before the logging line and get... {'type': 'INTERPOLATED_PLANAR', 'points': {'x': ["36.984168", "36.936199", "36.886294", "36.743338", "36.596805", "36.361678", "36.121863", "35.799131", "35.471258", "35.067066", "34.657944", "34.179809", "33.697509", "33.154101", "32.607652", "32.008574", "31.407699", "30.763285", "30.118196", "29.439331", "28.760467", "28.058529", "27.356491", "26.643167", "25.929480", "25.215794", "24.502108", "23.799047", "23.097008", "22.415478", "21.736613", "21.087382", "20.442968", "19.831837", "19.228002", "18.671251", "18.123513", "17.631319", "17.149360", "16.731198", "16.323760", "15.988126", "15.662794", "15.416878", "15.179852", "15.029194", "14.885082", "14.833251", "14.784894", "14.833251", "14.885082", "15.029195", "15.179853", "15.416879", "15.662795", "15.988127", "16.323761", "16.731199", "17.149361", "17.631320", "18.123514", "18.671253", "19.228004", "19.831839", "20.442970", "21.087384", "21.736615", "22.415480", "23.097010", "23.799048", "24.502109", "25.215795", "25.929482", "26.643168", "27.356492", "28.058530", "28.760468", "29.439332", "30.118197", "30.763286", "31.407700", "32.008574", "32.607653", "33.154102", "33.697510", "34.179810", "34.657945", "35.067066", "35.471259", "35.799131", "36.121863", "36.361678", "36.596805", "36.743338", "36.886293", "36.936199"], 'y': ["-125.740652", "-126.454185", "-127.167449", "-127.868150", "-128.567840", "-129.243201", "-129.916513", "-130.554647", "-131.189651", "-131.779550", "-132.365458", "-132.897179", "-133.424506", "-133.889318", "-134.349948", "-134.740409", "-135.127588", "-135.437599", "-135.745889", "-135.970706", "-136.195523", "-136.332162", "-136.468403", "-136.516946", "-136.562584", "-136.522528", "-136.476890", "-136.348842", "-136.212602", "-135.998282", "-135.773465", "-135.475724", "-135.165714", "-134.785574", "-134.392102", "-133.936085", "-133.467676", "-132.942622", "-132.406769", "-131.820953", "-131.226454", "-130.589602", "-129.946473", "-129.269698", "-128.589038", "-127.884678", "-127.178467", "-126.459800", "-125.740651", "-125.021501", "-124.302834", "-123.596623", "-122.892263", "-122.211603", "-121.534828", "-120.891700", "-120.254847", "-119.660348", "-119.074532", "-118.538679", "-118.013625", "-117.545216", "-117.089200", "-116.695728", "-116.315588", "-116.005578", "-115.707838", "-115.483021", "-115.268701", "-115.132460", "-115.004413", "-114.958775", "-114.918719", "-114.964357", "-115.012900", "-115.149141", "-115.285781", "-115.510597", "-115.735414", "-116.043704", "-116.353715", "-116.740894", "-117.131356", "-117.591986", "-118.056797", "-118.584124", "-119.115846", "-119.701754", "-120.291652", "-120.926656", "-121.564791", "-122.238103", "-122.913463", "-123.613153", "-124.313854", "-125.027118"], 'z': ["-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000", "-29.250000"]}}

[Sikerdebaard]

Unfortunately I have no experience with contour type INTERPOLATED_PLANAR.

I've created a feature branch that adds this contour to rtstructcontour2mask.py. Maybe you can try it out and let me know if it produces the correct results?

You can find the feature branch here: d635c97cd96418983377c53a347cc33f42a5006a

[xfuren]

This branch worked and generated the expected result for me.