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Sikerdebaard / dcmrtstruct2nii

DICOM RT-Struct to mask
MIT License
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Single NIFTI file with all structures #29

Closed monjoybme closed 2 years ago

monjoybme commented 2 years ago

I need to generate a single NIFTI file with all the structures. As of now, this code generates multiple NIFTI files for multiple structures.

Sikerdebaard commented 2 years ago

Unfortunately this is currently unsupported. The reason for this is that structures can overlap and there is currently no strategy implemented to resolve overlaps.

Perhaps fslutils has a tool to do what you want. For example you could merge the NIfTI file outputs from dcmrtstruct2nii with fslmerge or perhaps fslroi.

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Fslutils