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Sikerdebaard / dcmrtstruct2nii

DICOM RT-Struct to mask
MIT License
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Masks are empty #49

Open wanderine opened 6 months ago

wanderine commented 6 months ago

I run the script and there are no warnings or errors but the masks are empty?

Sikerdebaard commented 6 months ago

What have you tried so far and what made you conclude that the masks are empty?

wanderine commented 6 months ago

I ran this command, but when I open the masks in Slicer and AFNI they are empty

dcmrtstruct2nii convert -r singlemri/RS.dcm -d singlemri/ -o nifti

Please cite:

Thomas Phil, Thomas Albrecht, Skylar Gay, & Mathis Ersted Rasmussen. (2023). Sikerdebaard/dcmrtstruct2nii: dcmrtstruct2nii v5 (Version v5). Zenodo. https://doi.org/10.5281/zenodo.4037864

Working on mask BODY

Structure BODY is out of bounds, ignoring contour!

Working on mask CTV

Working on mask Eye_L

Working on mask Chiasm

Working on mask PTV

Working on mask Brain_Stem

Working on mask Eye_R

Working on mask Brain

Working on mask OpticNerve_L

Working on mask OpticNerve_R

Working on mask GTV

Working on mask Z_external

Structure Z_external is out of bounds, ignoring contour!

Working on mask Lens_L

Working on mask Lens_R

Converting original DICOM to nii

Success!

Den fre 22 mars 2024 kl 16:44 skrev Thomas Phil @.***>:

What have you tried so far and what made you conclude that the masks are empty?

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