Is it possible to use custom motif database ?

Simon-Coetzee / motifBreakR

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.

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Is it possible to use custom motif database ? #17

Closed gouthamatla closed 4 years ago

gouthamatla commented 4 years ago

Hi, I have custom motifs in transfac format. These are the 'root' motifs after clustering all the PWMs. I would like to use these root motifs for MotifbreakR analysis. Let me know if I will be able to do that.

Thanks, Goutham A

dennishazelett commented 4 years ago

You will have to format your custom motifs compatible with R/Bioconductor package MotifDb.