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Simon-Leonard / APERO

small RNA detection from paired-end RNA-seq data
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single-end data #3

Closed Jomagrax closed 4 years ago

Jomagrax commented 4 years ago

Hi, I am seriusly considering using this software but my data is single-end, could I still use It?

Simon-Leonard commented 4 years ago

Hi, I have updated the programm in a new branch to support single end data analysis. You can install this version with : install_github("Simon-Leonard/APERO", ref = "single_end_compatibility")

To check that you have the correct version, you should have a new argument (paired_end_data) in both APERO_start_detection and APERO_end_detection functions. The default value of paired_end_data is TRUE so set it to FALSE and it should works =)

Simon

Jomagrax commented 4 years ago

Hi simon,

Thank you very much for your help, I'll let you know if It work, you saved my life!!

Jose.

On Sat, Mar 28, 2020 at 3:59 PM Simon-Leonard notifications@github.com wrote:

Hi, I have updated the programm in a new branch to support single end data analysis. You can install this version with : install_github("Simon-Leonard/APERO", ref = "single_end_compatibility")

To check that you have the correct version, you should have a new argument (paired_end_data) in both APERO_start_detection and APERO_end_detection functions. The default value of paired_end_data is TRUE so set it to FALSE and it should works =)

Simon

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