Closed KKotryna closed 4 years ago
Hi,
Here is a description of each column : ID_Transcrit : Detected transcript ID Position : Start position of the detected transcript Positional.Uncertainty : Uncerntainty of the detected position (in nt) lg : Length of the detected RNA str : Strand of the detected RNA freq : Number of reads at the start positions iteration_nb : Number of iterations used to detect the RNA end (See the end detection method in APERO paper) last_Ftsse : Laste Ftsse value (see the APERO paper for the definition of Ftsse) Class : Annotation of the detected RNA according to supplementary figure 2 in APERO paper Comment : Detailed annotation
I will add this to the read me !
Bests, Simon
Hi, I wanted to ask about APERO_end_detection output. As I understand it should be a table containing start and end positions for each sRNA. I ran APERO with example BAM file and example script. The colnames of my results variables are:
Could you please provide more details/explanations about each column and its meaning?