Here is a description of each column :
ID_Transcrit : Detected transcript ID
Position : Start position of the detected transcript
Positional.Uncertainty : Uncerntainty of the detected position (in nt)
lg : Length of the detected RNA
str : Strand of the detected RNA
freq : Number of reads at the start positions
iteration_nb : Number of iterations used to detect the RNA end (See the end detection method in APERO paper)
last_Ftsse : Laste Ftsse value (see the APERO paper for the definition of Ftsse)
Class : Annotation of the detected RNA according to supplementary figure 2 in APERO paper
Comment : Detailed annotation
Hey Simon,
i have two questions.
Shouldn't last_Ftsse be defined as "last Fstart,e" to make the connection to the paper?
And is the coordinate of the position, 0 based like the bam file or 1-based?
Best regards,
Anton
Hi,
Here is a description of each column : ID_Transcrit : Detected transcript ID Position : Start position of the detected transcript Positional.Uncertainty : Uncerntainty of the detected position (in nt) lg : Length of the detected RNA str : Strand of the detected RNA freq : Number of reads at the start positions iteration_nb : Number of iterations used to detect the RNA end (See the end detection method in APERO paper) last_Ftsse : Laste Ftsse value (see the APERO paper for the definition of Ftsse) Class : Annotation of the detected RNA according to supplementary figure 2 in APERO paper Comment : Detailed annotation
I will add this to the read me !
Bests, Simon
Originally posted by @Simon-Leonard in https://github.com/Simon-Leonard/APERO/issues/5#issuecomment-632677901
Hey Simon, i have two questions. Shouldn't last_Ftsse be defined as "last Fstart,e" to make the connection to the paper? And is the coordinate of the position, 0 based like the bam file or 1-based? Best regards, Anton