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SimonDedman / gbm.auto

Machine-learning Boosted Regression Tree software suite for species distribution modelling in R
https://doi.org/10.1371/journal.pone.0188955
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Labels for data families on Report CSV- possible error? #73

Open nffarabaugh opened 2 years ago

nffarabaugh commented 2 years ago

Hello,

I am running a BRT on ecological count data using the software, I therefore selected the Poisson distribution as the data family. So: fam1 = c("poisson"), fam2 = c( "poisson")

However the report CSV the various models are still labeled as "Gaus_BRT...". I wanted to make sure that this was just an error in the auto generated label and not with the process of selecting the appropriate data family.

Thanks for the help!

SimonDedman commented 2 years ago

Thanks. I need to overhaul the labels. L261 gaus should be runfam2 or better L263 brv to fam1rv L264 grv to fam2rv L265 Bin_Preds to fam1preds L266 Gaus_Preds to fam2preds

replace bin with fam1 in all object names replace gaus with fam2 in all object names

L452 replace Bin Binary with fam1. Ditto L468 fam2

Tedious. Just grind through it semi-manually

nffarabaugh commented 2 years ago

Gotcha,

Easy enough to do manually when reporting data, so long as I am sure that "Bin" and "Gaus" actually mean whatever families are selected for Fam1 and Fam2 when not doing defaults.