search

SimonGreenhill / treemaker

A Python library for creating a Newick formatted tree from a set of classification strings
BSD 3-Clause "New" or "Revised" License
8 stars 2 forks source link

Update sphinx to 2.4.0 #28

Closed pyup-bot closed 4 years ago

pyup-bot commented 4 years ago

This PR updates sphinx from 2.1.2 to 2.4.0.

Changelog ### 2.4.0 ``` ===================================== Deprecated ---------- * The ``decode`` argument of ``sphinx.pycode.ModuleAnalyzer()`` * ``sphinx.directives.other.Index`` * ``sphinx.environment.temp_data['gloss_entries']`` * ``sphinx.environment.BuildEnvironment.indexentries`` * ``sphinx.environment.collectors.indexentries.IndexEntriesCollector`` * ``sphinx.ext.apidoc.INITPY`` * ``sphinx.ext.apidoc.shall_skip()`` * ``sphinx.io.FiletypeNotFoundError`` * ``sphinx.io.get_filetype()`` * ``sphinx.pycode.ModuleAnalyzer.encoding`` * ``sphinx.roles.Index`` * ``sphinx.util.detect_encoding()`` * ``sphinx.util.get_module_source()`` * ``sphinx.util.inspect.Signature`` * ``sphinx.util.inspect.safe_getmembers()`` * ``sphinx.writers.latex.LaTeXTranslator.settings.author`` * ``sphinx.writers.latex.LaTeXTranslator.settings.contentsname`` * ``sphinx.writers.latex.LaTeXTranslator.settings.docclass`` * ``sphinx.writers.latex.LaTeXTranslator.settings.docname`` * ``sphinx.writers.latex.LaTeXTranslator.settings.title`` * ``sphinx.writers.latex.ADDITIONAL_SETTINGS`` * ``sphinx.writers.latex.DEFAULT_SETTINGS`` * ``sphinx.writers.latex.LUALATEX_DEFAULT_FONTPKG`` * ``sphinx.writers.latex.PDFLATEX_DEFAULT_FONTPKG`` * ``sphinx.writers.latex.XELATEX_DEFAULT_FONTPKG`` * ``sphinx.writers.latex.XELATEX_GREEK_DEFAULT_FONTPKG`` Features added -------------- * 6910: inheritance_diagram: Make the background of diagrams transparent * 6446: duration: Add ``sphinx.ext.durations`` to inspect which documents slow down the build * 6837: LaTeX: Support a nested table * 7115: LaTeX: Allow to override LATEXOPTS and LATEXMKOPTS via environment variable * 6966: graphviz: Support ``:class:`` option * 6696: html: ``:scale:`` option of image/figure directive not working for SVG images (imagesize-1.2.0 or above is required) * 6994: imgconverter: Support illustrator file (.ai) to .png conversion * autodoc: Support Positional-Only Argument separator (PEP-570 compliant) * autodoc: Support type annotations for variables * 2755: autodoc: Add new event: :event:`autodoc-before-process-signature` * 2755: autodoc: Support type_comment style (ex. `` type: (str) -> str``) annotation (python3.8+ or `typed_ast <https://github.com/python/typed_ast>`_ is required) * 7051: autodoc: Support instance variables without defaults (PEP-526) * 6418: autodoc: Add a new extension ``sphinx.ext.autodoc.typehints``. It shows typehints as object description if ``autodoc_typehints = "description"`` set. This is an experimental extension and it will be integrated into autodoc core in Sphinx-3.0 * SphinxTranslator now calls visitor/departure method for super node class if visitor/departure method for original node class not found * 6418: Add new event: :event:`object-description-transform` * py domain: :rst:dir:`py:data` and :rst:dir:`py:attribute` take new options named ``:type:`` and ``:value:`` to describe its type and initial value * 6785: py domain: ``:py:attr:`` is able to refer properties again * 6772: apidoc: Add ``-q`` option for quiet mode Bugs fixed ---------- * 6925: html: Remove redundant type="text/javascript" from <script> elements * 7112: html: SVG image is not layouted as float even if aligned * 6906, 6907: autodoc: failed to read the source codes encoeded in cp1251 * 6961: latex: warning for babel shown twice * 7059: latex: LaTeX compilation falls into infinite loop (wrapfig issue) * 6581: latex: ``:reversed:`` option for toctree does not effect to LaTeX build * 6559: Wrong node-ids are generated in glossary directive * 6986: apidoc: misdetects module name for .so file inside module * 6899: apidoc: private members are not shown even if ``--private`` given * 6327: apidoc: Support a python package consisted of __init__.so file * 6999: napoleon: fails to parse tilde in :exc: role * 7019: gettext: Absolute path used in message catalogs * 7023: autodoc: nested partial functions are not listed * 7023: autodoc: partial functions imported from other modules are listed as module members without :impoprted-members: option * 6889: autodoc: Trailing comma in ``:members::`` option causes cryptic warning * 6568: autosummary: ``autosummary_imported_members`` is ignored on generating a stub file for submodule * 7055: linkcheck: redirect is treated as an error * 7088: HTML template: If ``navigation_with_keys`` option is activated, modifier keys are ignored, which means the feature can interfere with browser features * 7090: std domain: Can't assign numfig-numbers for custom container nodes * 7106: std domain: enumerated nodes are marked as duplicated when extensions call ``note_explicit_target()`` * 7095: dirhtml: Cross references are broken via intersphinx and ``:doc:`` role * C++: - Don't crash when using the ``struct`` role in some cases. - Don't warn when using the ``var``/``member`` role for function parameters. - Render call and braced-init expressions correctly. * 7097: Filenames of images generated by ``sphinx.transforms.post_transforms.images.ImageConverter`` or its subclasses (used for latex build) are now sanitized, to prevent broken paths ``` ### 2.3.1 ``` ===================================== Bugs fixed ---------- * 6936: sphinx-autogen: raises AttributeError ``` ### 2.3.0 ``` ===================================== Incompatible changes -------------------- * 6742: ``end-before`` option of :rst:dir:`literalinclude` directive does not match the first line of the code block. * 1331: Change default User-Agent header to ``"Sphinx/X.Y.Z requests/X.Y.Z python/X.Y.Z"``. It can be changed via :confval:`user_agent`. * 6867: text: content of admonitions starts after a blank line Deprecated ---------- * ``sphinx.builders.gettext.POHEADER`` * ``sphinx.io.SphinxStandaloneReader.app`` * ``sphinx.io.SphinxStandaloneReader.env`` * ``sphinx.util.texescape.tex_escape_map`` * ``sphinx.util.texescape.tex_hl_escape_map_new`` * ``sphinx.writers.latex.LaTeXTranslator.no_contractions`` Features added -------------- * 6707: C++, support bit-fields. * 267: html: Eliminate prompt characters of doctest block from copyable text * 6548: html: Use favicon for OpenSearch if available * 6729: html theme: agogo theme now supports ``rightsidebar`` option * 6780: Add PEP-561 Support * 6762: latex: Allow to load additonal LaTeX packages via ``extrapackages`` key of :confval:`latex_elements` * 1331: Add new config variable: :confval:`user_agent` * 6000: LaTeX: have backslash also be an inline literal word wrap break character * 4186: LaTeX: Support upLaTeX as a new :confval:`latex_engine` (experimental) * 6812: Improve a warning message when extensions are not parallel safe * 6818: Improve Intersphinx performance for multiple remote inventories. * 2546: apidoc: .so file support * 6798: autosummary: emit ``autodoc-skip-member`` event on generating stub file * 6483: i18n: make explicit titles in toctree translatable * 6816: linkcheck: Add :confval:`linkcheck_auth` option to provide authentication information when doing ``linkcheck`` builds * 6872: linkcheck: Handles HTTP 308 Permanent Redirect * 6613: html: Wrap section number in span tag * 6781: gettext: Add :confval:`gettext_last_translator' and :confval:`gettext_language_team` to customize headers of POT file Bugs fixed ---------- * 6668: LaTeX: Longtable before header has incorrect distance (refs: `latex3/latex2e173`_) .. _latex3/latex2e173: https://github.com/latex3/latex2e/issues/173 * 6618: LaTeX: Avoid section names at the end of a page * 6738: LaTeX: Do not replace unicode characters by LaTeX macros on unicode supported LaTeX engines: ¶, §, €, ∞, ±, →, ‣, –, superscript and subscript digits go through "as is" (as default OpenType font supports them) * 6704: linkcheck: Be defensive and handle newly defined HTTP error code * 6806: linkcheck: Failure on parsing content * 6655: image URLs containing ``data:`` causes gettext builder crashed * 6584: i18n: Error when compiling message catalogs on Hindi * 6718: i18n: KeyError is raised if section title and table title are same * 6743: i18n: :confval:`rst_prolog` breaks the translation * 6708: mathbase: Some deprecated functions have removed * 6709: autodoc: mock object does not work as a class decorator * 5070: epub: Wrong internal href fragment links * 6712: Allow not to install sphinx.testing as runtime (mainly for ALT Linux) * 6741: html: search result was broken with empty :confval:`html_file_suffix` * 6001: LaTeX does not wrap long code lines at backslash character * 6804: LaTeX: PDF build breaks if admonition of danger type contains code-block long enough not to fit on one page * 6809: LaTeX: code-block in a danger type admonition can easily spill over bottom of page * 6793: texinfo: Code examples broken following "sidebar" * 6813: An orphan warning is emitted for included document on Windows. Thanks to drillan * 6850: Fix smartypants module calls re.sub() with wrong options * 6824: HTML search: If a search term is partially matched in the title and fully matched in a text paragraph on the same page, the search does not include this match. * 6848: config.py shouldn't pop extensions from overrides * 6867: text: extra spaces are inserted to hyphenated words on folding lines * 6886: LaTeX: xelatex converts straight double quotes into right curly ones (shows when :confval:`smartquotes` is ``False``) * 6890: LaTeX: even with smartquotes off, PDF output transforms straight quotes and consecutive hyphens into curly quotes and dashes * 6876: LaTeX: multi-line display of authors on title page has ragged edges * 6887: Sphinx crashes with docutils-0.16b0 * 6920: sphinx-build: A console message is wrongly highlighted * 6900: sphinx-build: ``-D`` option does not considers ``0`` and ``1`` as a boolean value ``` ### 2.2.2 ``` ===================================== Incompatible changes -------------------- * 6803: For security reason of python, parallel mode is disabled on macOS and Python3.8+ Bugs fixed ---------- * 6776: LaTeX: 2019-10-01 LaTeX release breaks :file:`sphinxcyrillic.sty` * 6815: i18n: French, Hindi, Chinese, Japanese and Korean translation messages has been broken * 6803: parallel build causes AttributeError on macOS and Python3.8 ``` ### 2.2.1 ``` ===================================== Bugs fixed ---------- * 6641: LaTeX: Undefined control sequence ``\sphinxmaketitle`` * 6710: LaTeX not well configured for Greek language as main language * 6759: validation of html static paths and extra paths no longer throws an error if the paths are in different directories ``` ### 2.2.0 ``` ===================================== Incompatible changes -------------------- * apidoc: template files are renamed to ``.rst_t`` * html: Field lists will be styled by grid layout Deprecated ---------- * ``sphinx.domains.math.MathDomain.add_equation()`` * ``sphinx.domains.math.MathDomain.get_next_equation_number()`` * The ``info`` and ``warn`` arguments of ``sphinx.ext.autosummary.generate.generate_autosummary_docs()`` * ``sphinx.ext.autosummary.generate._simple_info()`` * ``sphinx.ext.autosummary.generate._simple_warn()`` * ``sphinx.ext.todo.merge_info()`` * ``sphinx.ext.todo.process_todo_nodes()`` * ``sphinx.ext.todo.process_todos()`` * ``sphinx.ext.todo.purge_todos()`` Features added -------------- * 5124: graphviz: ``:graphviz_dot:`` option is renamed to ``:layout:`` * 1464: html: emit a warning if :confval:`html_static_path` and :confval:`html_extra_path` directories are inside output directory * 6514: html: Add a label to search input for accessability purposes * 5602: apidoc: Add ``--templatedir`` option * 6475: Add ``override`` argument to ``app.add_autodocumenter()`` * 6310: imgmath: let :confval:`imgmath_use_preview` work also with the SVG format for images rendering inline math * 6533: LaTeX: refactor visit_enumerated_list() to use ``\sphinxsetlistlabels`` * 6628: quickstart: Use ``https://docs.python.org/3/`` for default setting of :confval:`intersphinx_mapping` * 6419: sphinx-build: give reasons why rebuilded Bugs fixed ---------- * py domain: duplicated warning does not point the location of source code * 6499: html: Sphinx never updates a copy of :confval:`html_logo` even if original file has changed * 1125: html theme: scrollbar is hard to see on classic theme and macOS * 5502: linkcheck: Consider HTTP 503 response as not an error * 6439: Make generated download links reproducible * 6486: UnboundLocalError is raised if broken extension installed * 6567: autodoc: :confval:`autodoc_inherit_docstrings` does not effect to ``__init__()`` and ``__new__()`` * 6574: autodoc: :confval:`autodoc_member_order` does not refer order of imports when ``'bysource'`` order * 6574: autodoc: missing type annotation for variadic and keyword parameters * 6589: autodoc: Formatting issues with autodoc_typehints='none' * 6605: autodoc: crashed when target code contains custom method-like objects * 6498: autosummary: crashed with wrong autosummary_generate setting * 6507: autosummary: crashes without no autosummary_generate setting * 6511: LaTeX: autonumbered list can not be customized in LaTeX since Sphinx 1.8.0 (refs: 6533) * 6531: Failed to load last environment object when extension added * 736: Invalid sort in pair index * 6527: :confval:`last_updated` wrongly assumes timezone as UTC * 5592: std domain: :rst:dir:`option` directive registers an index entry for each comma separated option * 6549: sphinx-build: Escaped characters in error messages * 6545: doctest comments not getting trimmed since Sphinx 1.8.0 * 6561: glossary: Wrong hyperlinks are generated for non alphanumeric terms * 6620: i18n: classifiers of definition list are not translated with docutils-0.15 * 6474: ``DocFieldTransformer`` raises AttributeError when given directive is not a subclass of ObjectDescription ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/ - Homepage: http://sphinx-doc.org/
coveralls commented 4 years ago

Coverage Status

Coverage remained the same at 100.0% when pulling a3cf561db537edd05e6b97e35948d342f00c5861 on pyup-update-sphinx-2.1.2-to-2.4.0 into 4c4c4de4cc829b0c64e32bd03784367c093055ca on master.

pyup-bot commented 4 years ago

Closing this in favor of #29