I have got a Nvidia Jetson TX2 with the following specs:
Processor: ARMv8 rev 3 (v8l) x 4
Graphics: NVIDIA Tegra X2
GNOME: 3.28.2
OS Type: 64 bit
After having no luck installing SimpleITK with pip, I have attempted building it with following code that I took from here:
pip install git+https://github.com/SimpleITK/SimpleITKPythonPackage.git -v
The installation almost finished but then it produced the following error:
` [961/974] Building CXX object Code/BasicFilters/src/CMakeFiles/SimpleITK_ITKWatersheds.dir/sitkMorphologicalWatershedFromMarkersImageFilter.cxx.o
[962/974] Building CXX object Code/BasicFilters/src/CMakeFiles/SimpleITKSimpleITKFilters.dir/sitkPasteImageFilter.cxx.o
[963/974] Building CXX object Code/IO/src/CMakeFiles/SimpleITKIO.dir/sitkImageFileReader.cxx.o
ninja: build stopped: subcommand failed.
FAILED: SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb/SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build
cd /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb/SimpleITK-build && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake --build . && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake -E touch /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb/SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build
ninja: build stopped: subcommand failed.
FAILED: SimpleITK-superbuild-prefix/src/SimpleITK-superbuild-stamp/SimpleITK-superbuild-build /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/SimpleITK-superbuild-prefix/src/SimpleITK-superbuild-stamp/SimpleITK-superbuild-build
cd /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake --build . && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake -E touch /tmp/pip-pctnm39-build/_skbuild/linux-aarch64-3.6/cmake-build/SimpleITK-superbuild-prefix/src/SimpleITK-superbuild-stamp/SimpleITK-superbuild-build
ninja: build stopped: subcommand failed.
Traceback (most recent call last):
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/skbuild/setuptools_wrap.py", line 593, in setup
cmkr.make(make_args, env=env)
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/skbuild/cmaker.py", line 515, in make
os.path.abspath(CMAKE_BUILD_DIR())))
An error occurred while building with CMake.
Command:
cmake --build . --target install --config Release --
Source directory:
/tmp/pip-pctnm39_-build
Working directory:
/tmp/pip-pctnm39_-build/_skbuild/linux-aarch64-3.6/cmake-build
Please see CMake's output for more information.
error
Cleaning up...
Removing source in /tmp/pip-pctnm39-build
Command "/home/tentacools/Desktop/bronchinet/bronvenv/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-pctnm39-build/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-4m65moo9-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/tentacools/Desktop/bronchinet/bronvenv/include/site/python3.6/SimpleITK" failed with error code 1 in /tmp/pip-pctnm39_-build/
Exception information:
Traceback (most recent call last):
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/commands/install.py", line 360, in run
prefix=options.prefix_path,
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/req/req_set.py", line 784, in install
**kwargs
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/req/req_install.py", line 878, in install
spinner=spinner,
File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/utils/init.py", line 725, in call_subprocess
% (commanddesc, proc.returncode, cwd))
pip.exceptions.InstallationError: Command "/home/tentacools/Desktop/bronchinet/bronvenv/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-pctnm39-build/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-4m65moo9-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/tentacools/Desktop/bronchinet/bronvenv/include/site/python3.6/SimpleITK" failed with error code 1 in /tmp/pip-pctnm39_-build/
`
Does anyone have any ideas of what this is or can be related to?
Thanks in advance!
Not sure about the error. Please note that the code you are using is not what is recommended for manual building and language wrapping, that process is described here.
I don't think that is the problem here, possibly @blowekamp can comment.
Hi everyone,
I have got a Nvidia Jetson TX2 with the following specs: Processor: ARMv8 rev 3 (v8l) x 4 Graphics: NVIDIA Tegra X2 GNOME: 3.28.2 OS Type: 64 bit
After having no luck installing SimpleITK with pip, I have attempted building it with following code that I took from here:
pip install git+https://github.com/SimpleITK/SimpleITKPythonPackage.git -v
The installation almost finished but then it produced the following error: ` [961/974] Building CXX object Code/BasicFilters/src/CMakeFiles/SimpleITK_ITKWatersheds.dir/sitkMorphologicalWatershedFromMarkersImageFilter.cxx.o [962/974] Building CXX object Code/BasicFilters/src/CMakeFiles/SimpleITKSimpleITKFilters.dir/sitkPasteImageFilter.cxx.o [963/974] Building CXX object Code/IO/src/CMakeFiles/SimpleITKIO.dir/sitkImageFileReader.cxx.o ninja: build stopped: subcommand failed. FAILED: SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb/SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build cd /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb/SimpleITK-build && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake --build . && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake -E touch /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb/SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build ninja: build stopped: subcommand failed. FAILED: SimpleITK-superbuild-prefix/src/SimpleITK-superbuild-stamp/SimpleITK-superbuild-build /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/SimpleITK-superbuild-prefix/src/SimpleITK-superbuild-stamp/SimpleITK-superbuild-build cd /tmp/pip-pctnm39-build/skbuild/linux-aarch64-3.6/cmake-build/sitk-sb && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake --build . && /home/tentacools/.local/lib/python3.6/site-packages/cmake/data/bin/cmake -E touch /tmp/pip-pctnm39-build/_skbuild/linux-aarch64-3.6/cmake-build/SimpleITK-superbuild-prefix/src/SimpleITK-superbuild-stamp/SimpleITK-superbuild-build ninja: build stopped: subcommand failed. Traceback (most recent call last): File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/skbuild/setuptools_wrap.py", line 593, in setup cmkr.make(make_args, env=env) File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/skbuild/cmaker.py", line 515, in make os.path.abspath(CMAKE_BUILD_DIR())))
error Cleaning up... Removing source in /tmp/pip-pctnm39-build Command "/home/tentacools/Desktop/bronchinet/bronvenv/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-pctnm39-build/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-4m65moo9-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/tentacools/Desktop/bronchinet/bronvenv/include/site/python3.6/SimpleITK" failed with error code 1 in /tmp/pip-pctnm39_-build/ Exception information: Traceback (most recent call last): File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/basecommand.py", line 215, in main status = self.run(options, args) File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/commands/install.py", line 360, in run prefix=options.prefix_path, File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/req/req_set.py", line 784, in install **kwargs File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/req/req_install.py", line 878, in install spinner=spinner, File "/home/tentacools/Desktop/bronchinet/bronvenv/lib/python3.6/site-packages/pip/utils/init.py", line 725, in call_subprocess % (commanddesc, proc.returncode, cwd)) pip.exceptions.InstallationError: Command "/home/tentacools/Desktop/bronchinet/bronvenv/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-pctnm39-build/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-4m65moo9-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/tentacools/Desktop/bronchinet/bronvenv/include/site/python3.6/SimpleITK" failed with error code 1 in /tmp/pip-pctnm39_-build/ `
Does anyone have any ideas of what this is or can be related to? Thanks in advance!