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SinOncology / BreakID

BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read
GNU General Public License v3.0
13 stars 6 forks source link

not building #1

Open splaisan opened 5 years ago

splaisan commented 5 years ago

I get errors at make level.

I noticed lines in (CMakeLists.txt lines 1 to 15) 

    # to compile in linux machine using g++-6.3.0
    include_directories(/usr/local/include/c++/6.3.0)
    set(CMAKE_CXX_COMPILER "/usr/local/bin/x86_64-pc-linux-gnu-g++")
    set(CMAKE_C_COMPILER "/usr/local/bin/x86_64-pc-linux-gnu-gcc-6.3.0")
    SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -Wl,-rpath -Wl,/usr/local/lib64")

that refer to g++ and gcc I do not have standard under ubuntu 16.04

I have by contrast

/usr/include/c++/5 ...

/usr/bin/g++
/usr/bin/g++-5
/usr/bin/x86_64-linux-gnu-g++
/usr/bin/x86_64-linux-gnu-g++-5
/usr/bin/gcc
/usr/bin/gcc-5
/usr/bin/x86_64-linux-gnu-gcc
/usr/bin/x86_64-linux-gnu-gcc-5

should I install version 6 of these tools or alias these to the path you have defined or call them from where they are directly (version 5)?

fionakim commented 1 year ago

had you solved the problem？

splaisan commented 1 year ago

No, I am still waiting on the answers to my questions in order to properly install the tool. A docker image would probably be of good help for other having this same issue.