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SindisoNyathi / doctoralrepo_dengue_phylo

Contains code, data, xmls and outputs for phylogenetic and phylodynamics work
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where to find the input data for each plot? #1

Open liamxg opened 3 weeks ago

liamxg commented 3 weeks ago

Dear @SindisoNyathi,

Could I know where to find the input data for each plot?

Thanks.

Best, Liam

SindisoNyathi commented 3 weeks ago

Dear Liam,

I have uploaded the output files from the beast and raxml analyses and labeled them with the corresponding Figures from the papers.

Sindiso.

liamxg commented 3 weeks ago

Dear @SindisoNyathi,

Cool! Thanks.

Could you also upload the DENV2/final_seq_metadata_denv2.csv file, thanks.

Best, Liam

SindisoNyathi commented 1 week ago

Finally uploaded this code.

You can find it here: https://github.com/SindisoNyathi/doctoralrepo_dengue_phylo/blob/main/r/plotjumps_rewards_denv123.R

On Tue, Sep 10, 2024 at 11:08 AM Liam @.***> wrote:

Dear @SindisoNyathi https://github.com/SindisoNyathi,

Cool! Thanks.

Could you also upload the scripts to plot them, that will be much more helpful, thanks.

Best, Liam

— Reply to this email directly, view it on GitHub https://github.com/SindisoNyathi/doctoralrepo_dengue_phylo/issues/1#issuecomment-2341196708, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJKZTQMYB2PKLZV4BRWZKHTZV4DQVAVCNFSM6AAAAABN3WCDPOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNBRGE4TMNZQHA . You are receiving this because you were mentioned.Message ID: @.***>