SingleR-inc / SingleR

Clone of the Bioconductor repository for the SingleR package.
https://bioconductor.org/packages/devel/bioc/html/SingleR.html
GNU General Public License v3.0
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Modifications of DatabaseImmuneCellExpressionData() for epithelial cells? #212

Closed dajsfiles closed 1 year ago

dajsfiles commented 2 years ago

Hi,

I'm attempting to use some code that was written for single cell sequencing by someone else, however, I realized that it was written only for immune cells, not epithelial cells. Mainly, it uses DatabaseImmuneCellExpressionData() to create a database of cell types. Is there any way I could modify this for epithelial cells?

Thanks!

j-andrews7 commented 2 years ago

Take a look through other options in celldex. Or provide your own reference with the appropriate cell types included.