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SingleR-inc / SingleR

Clone of the Bioconductor repository for the SingleR package.
https://bioconductor.org/packages/devel/bioc/html/SingleR.html
GNU General Public License v3.0
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SingleR: GetAssayData doesn't work for multiple layers in v5 assay #266

Closed Eos-halo closed 4 months ago

Eos-halo commented 5 months ago

I am having issue running the Single R (2.0.0) . Please help

pred.scRNA <- SingleR(test = scRNA@assays$RNA@data, ref = ref, labels = ref$label.main, clusters = scRNA@active.ident) Error: GetAssayData doesn't work for multiple layers in v5 assay

j-andrews7 commented 5 months ago

Seurat data structures and retrieval functions are not under the purview of SingleR.

Please contact the Seurat devs and view their docs.