Open moutazhelal opened 2 years ago
If the documentation on ?BlueprintEncode
is accurate, the values were generated with edgeR, which uses log2-transformation. So your final step would be more accurately 2^log_counts
(keeping in mind that the "logcounts"
assay holds log-TPMs rather than actual log-counts).
Dear Authors,
Thank you for reading my issue I am trying to obtain the TPM count from the Blueprint Encode Data set I used
assay()
to get the log transfomed counts and then appliedexp()
to get the TPMis this the right way to do this
Thank you very much, Best, Moutaz