SingleR-inc / celldex

Collection of cell type reference datasets.
https://bioconductor.org/packages/devel/data/experiment/html/celldex.html
44 stars 7 forks source link

how to extract expression table #7

Closed dm8000 closed 2 years ago

dm8000 commented 3 years ago

Hello

Following the vignette I was able to easily browse the available datasets, but couldn't figure out how to extract the expression tables

Is there any command specific for this?

LTLA commented 3 years ago
library(celldex)
ref <- MouseRNAseqData()
assay(ref)

https://bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html