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SionBayliss / PIRATE

A toolbox for pangenome analysis and threshold evaluation.
GNU General Public License v3.0
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CD-HIT called wrongly in PangenomeConstruction.pl and PangenomeConstruction.bkup2.pl #1

Closed thorellk closed 6 years ago

thorellk commented 7 years ago

The CD-HIT executable is called as cdhit instead of cd-hit at

PangenomeConstruction.pl:103: cdhit -i $working_dir/$sample.temp.fasta -o $working_dir/$sample.$i -c $curr_thresh -n 5 >> $cdhit_log;

PangenomeConstruction.bkup.pl:99: cdhit -i $working_dir/$sample.temp.fasta -o $working_dir/$sample.$i -c $curr_thresh -n 5;

PangenomeConstruction.bkup2.pl:102: cdhit -i $working_dir/$sample.temp.fasta -o $working_dir/$sample.$i -c $curr_thresh -n 5;

SionBayliss commented 6 years ago

Thanks Kaisa. All fixed now.