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SionBayliss / PIRATE

A toolbox for pangenome analysis and threshold evaluation.
GNU General Public License v3.0
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PIRATE --check wants to write to its own folder? #16

Closed tseemann closed 5 years ago

tseemann commented 5 years ago

We installed PIRATE but I want a user to check it, but it fails. Seems it wants to write to it's own folder? Can you use $outdir = File::Temp->tempdir(CLEANUP=>1) instead?

PIRATE --check

Running PIRATE on test files:
sh: /home/software/PIRATE/test/PIRATE/PIRATE.log: Permission denied
 - ERROR: PIRATE did not run correctly:
 - ERROR: PIRATE was not able to classify paralogs
 - WARNING: PIRATE could not make R plots (are dependencies installed)

 - tests completed
SionBayliss commented 5 years ago

Thanks for the suggestion - fixed.