Added to Brew pkg manager

[tseemann]

https://github.com/brewsci/homebrew-bio/pull/761

brew install brewsci/bio/pirate

[tseemann]

 - ERROR: could not make working directory in /usr/local/Cellar/pirate/1.0/libexec/bin/../scripts//../test/PIRATE/

Did you push #16 ? And use File::Temp->tempdir() ?

[SionBayliss]

Thanks! Yeah it is pushed to master. Odd. Is it pointed at the release version? I can make a new release with recent bugfixes if that is the issue.

[tseemann]

Brew can only use release versions (or tags). You can make a tag without making a release

git checkout master
git tag v1.0.1
git push --tags

[SionBayliss]

The new release included bug fixes and will (hopefully) be compatible with brew (v1.0.1)

[tseemann]

==> /usr/local/Cellar/pirate/1.0.1/bin/PIRATE --version 2>&1
==> /usr/local/Cellar/pirate/1.0.1/bin/PIRATE --help 2>&1
==> /usr/local/Cellar/pirate/1.0.1/bin/PIRATE --check
 - ERROR: could not make working directory in /usr/local/Cellar/pirate/1.0.1/libexec/bin/../scripts//../test/PIRATE/
Error: brewsci/bio/pirate: failed

Still getting the issue on MacOS.

[SionBayliss]

My bad. I missed a line. The newest tag (1.0.2) shouldn't create any files in PIRATE/test/.

[SionBayliss]

Sorry, I didn't mean to close this.

[tseemann]

Ok, it now works! your changes fixed all the issues with brew.