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SionBayliss / PIRATE

A toolbox for pangenome analysis and threshold evaluation.
GNU General Public License v3.0
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Missing --version flag #40

Closed tseemann closed 4 years ago

tseemann commented 4 years ago

should print to stdout one line:

PIRATE 1.0.4

and return 0

SionBayliss commented 4 years ago

I don't have the same error on my version when running from a local file. However, I do get it from the PIRATE file installed in PATH by conda. This persists even after updating using 'conda update PIRATE'. However, the correct version of the script is available (in which this has been fixed in a previous commit) via PATH on fresh installation with 'conda create -n * PIRATE'. So this looks like a conda issue on updating rather than an issue with the current version of PIRATE. Was this perhaps your experience? Do you have any idea what this could be, I am not that familiar with the conda intall/update process?

tseemann commented 4 years ago

@SionBayliss actually it does work in 1.0.3 but it is NOT LISTED IN THE --help :)