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SionBayliss / PIRATE

A toolbox for pangenome analysis and threshold evaluation.
GNU General Public License v3.0
88 stars 29 forks source link

extract_feature_sequences.pl failed #68

Closed 3josh4 closed 3 years ago

3josh4 commented 3 years ago

Hi there, I'm trying to run PIRATE on Ubuntu, but I get the following error message:

pirate error

There seems to be an issue with dependencies. I installed via apt-get and my system says BioPerl is up to date... any ideas on how to troubleshoot this?

Thank you in advance! --Josh

SionBayliss commented 3 years ago

Hi Josh,

Firstly, I would suggest installing via conda/miniconda as this should remove any dependency issues. Is there any more info in the log file?

All the best, Sion

3josh4 commented 3 years ago

Hi Sion, thanks very much for your response. I was able to get PIRATE working fine after all, I think I simply exceeded the number of threads allowed by my CPU, so my mistake there!

Appreciate your help! --Josh