Update dcm2niix to latest master version

SlicerDMRI / SlicerDcm2nii

Support loading DICOM data in Slicer using the functionality of the dcm2niix program.

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Update dcm2niix to latest master version #9

Open lassoan opened 2 years ago

lassoan commented 2 years ago

The development branch is used, because some features were not available in the master yet, but now we can switch to the master.

See discussion at https://github.com/SlicerDMRI/SlicerDcm2nii/issues/8#issuecomment-1011337188

hjmjohnson commented 2 years ago

@ihnorton

FYI: I'm trying to reconcile some format issues with dcm2niix for nrrd and nii formats.

https://github.com/rordenlab/dcm2niix/issues/612

The problem I am running into is that the gradient values in the "bvec" file are the same as those in the nhdr file, but the bvec has an implied identity "measurment frame" and the nhdr has a non-identity "measurement frame".