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SlicerDMRI / whitematteranalysis

White matter tractography clustering and more...
https://dmri.slicer.org/whitematteranalysis/
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Slicer won't open after downloading module #231

Open raphael-khorassani opened 3 months ago

raphael-khorassani commented 3 months ago

Hello there !

I recently had an issue with SlicerNeuro, when I downloaded it, after restarting Slicer, Slicer wouldn't open. With the help of @pieper, we discovered that SlicerNeuro downloaded many other extensions, and that when I deleted SlicerWMA it solved the problem : https://github.com/Slicer/SlicerNeuro/issues/2#issuecomment-2035076358

I'm using macOS, here is the report :

Translated Report (Full Report Below)

Process: Slicer [63967] Path: /Applications/Slicer.app/Contents/MacOS/Slicer Identifier: org.slicer.slicer Version: (5.7.0-2024-03-28) Code Type: X86-64 (Native) Parent Process: launchd [1] User ID: 502

Date/Time: 2024-04-02 16:46:28.1959 +0200 OS Version: macOS 13.6 (22G120) Report Version: 12 Anonymous UUID: A1661C8D-07E9-44C0-C32F-688669DEAF2A

Sleep/Wake UUID: 26608764-8C82-4F4B-A659-0C4DF33BF9AB

Time Awake Since Boot: 190000 seconds Time Since Wake: 1167 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_ARITHMETIC (SIGFPE) Exception Codes: 0x0000000000000001, 0x0000000000000000

Termination Reason: Namespace SIGNAL, Code 8 Floating point exception: 8 Terminating Process: exc handler [63967]

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libvtkCommonDataModel-9.1.dylib 0x12efde61b vtkCellArray::VisitState::VisitState() + 155 1 libvtkCommonDataModel-9.1.dylib 0x12efda18b vtkCellArray::vtkCellArray() + 75 2 libvtkCommonDataModel-9.1.dylib 0x12efda39c vtkCellArray::New() + 28 3 libvtkCommonDataModel-9.1.dylib 0x12f191905 _GLOBAL__sub_I_vtkPolyData.cxx + 101 4 dyld 0x7ff8066dc3fb invocation function for block in dyld4::Loader::findAndRunAllInitializers(dyld4::RuntimeState&) const::$_0::operator()() const + 175 5 dyld 0x7ff80671a9de invocation function for block in dyld3::MachOAnalyzer::forEachInitializer(Diagnostics&, dyld3::MachOAnalyzer::VMAddrConverter const&, void (unsigned int) block_pointer, void const) const + 132 6 dyld 0x7ff80670ef22 invocation function for block in dyld3::MachOFile::forEachSection(void (dyld3::MachOFile::SectionInfo const&, bool, bool&) block_pointer) const + 577 7 dyld 0x7ff8066bf0af dyld3::MachOFile::forEachLoadCommand(Diagnostics&, void (load_command const, bool&) block_pointer) const + 245 8 dyld 0x7ff80670e0bf dyld3::MachOFile::forEachSection(void (dyld3::MachOFile::SectionInfo const&, bool, bool&) block_pointer) const + 175 9 dyld 0x7ff80671075e dyld3::MachOFile::forEachInitializerPointerSection(Diagnostics&, void (unsigned int, unsigned int, bool&) block_pointer) const + 116 10 dyld 0x7ff80671a6ea dyld3::MachOAnalyzer::forEachInitializer(Diagnostics&, dyld3::MachOAnalyzer::VMAddrConverter const&, void (unsigned int) block_pointer, void const) const + 390 11 dyld 0x7ff8066d966c dyld4::Loader::findAndRunAllInitializers(dyld4::RuntimeState&) const + 220 12 dyld 0x7ff8066d985a dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 178 13 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 14 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 15 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 16 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 17 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 18 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 19 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 20 dyld 0x7ff8066d983d dyld4::Loader::runInitializersBottomUp(dyld4::RuntimeState&, dyld3::Array<dyld4::Loader const>&) const + 149 21 dyld 0x7ff8066dc46f dyld4::Loader::runInitializersBottomUpPlusUpwardLinks(dyld4::RuntimeState&) const::$_1::operator()() const + 97 22 dyld 0x7ff8066d98f1 dyld4::Loader::runInitializersBottomUpPlusUpwardLinks(dyld4::RuntimeState&) const + 93 23 dyld 0x7ff8066f63f6 dyld4::APIs::dlopen_from(char const, int, void) + 944 24 libpython3.9.dylib 0x11b75863d _PyImport_FindSharedFuncptr + 333 25 libpython3.9.dylib 0x11b7a359f _PyImport_LoadDynamicModuleWithSpec + 463 26 libpython3.9.dylib 0x11b7a2eeb _imp_create_dynamic + 315 27 libpython3.9.dylib 0x11b6c3b77 cfunction_vectorcall_FASTCALL + 199 28 libpython3.9.dylib 0x11b777ea8 _PyEval_EvalFrameDefault + 26648 29 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 30 libpython3.9.dylib 0x11b677419 _PyFunction_Vectorcall + 265 31 libpython3.9.dylib 0x11b77b10d call_function + 413 32 libpython3.9.dylib 0x11b777a74 _PyEval_EvalFrameDefault + 25572 33 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 34 libpython3.9.dylib 0x11b77b10d call_function + 413 35 libpython3.9.dylib 0x11b777a54 _PyEval_EvalFrameDefault + 25540 36 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 37 libpython3.9.dylib 0x11b77b10d call_function + 413 38 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 39 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 40 libpython3.9.dylib 0x11b77b10d call_function + 413 41 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 42 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 43 libpython3.9.dylib 0x11b77b10d call_function + 413 44 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 45 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 46 libpython3.9.dylib 0x11b678904 object_vacall + 356 47 libpython3.9.dylib 0x11b678b2a _PyObject_CallMethodIdObjArgs + 250 48 libpython3.9.dylib 0x11b7a1db9 PyImport_ImportModuleLevelObject + 1321 49 libpython3.9.dylib 0x11b7767fe _PyEval_EvalFrameDefault + 20846 50 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 51 libpython3.9.dylib 0x11b771591 PyEval_EvalCode + 81 52 libpython3.9.dylib 0x11b76e1bf builtin_exec + 623 53 libpython3.9.dylib 0x11b6c3b77 cfunction_vectorcall_FASTCALL + 199 54 libpython3.9.dylib 0x11b777ea8 _PyEval_EvalFrameDefault + 26648 55 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 56 libpython3.9.dylib 0x11b677419 _PyFunction_Vectorcall + 265 57 libpython3.9.dylib 0x11b77b10d call_function + 413 58 libpython3.9.dylib 0x11b777a74 _PyEval_EvalFrameDefault + 25572 59 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 60 libpython3.9.dylib 0x11b77b10d call_function + 413 61 libpython3.9.dylib 0x11b777a54 _PyEval_EvalFrameDefault + 25540 62 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 63 libpython3.9.dylib 0x11b77b10d call_function + 413 64 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 65 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 66 libpython3.9.dylib 0x11b77b10d call_function + 413 67 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 68 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 69 libpython3.9.dylib 0x11b77b10d call_function + 413 70 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 71 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 72 libpython3.9.dylib 0x11b677419 _PyFunction_Vectorcall + 265 73 libpython3.9.dylib 0x11b77b10d call_function + 413 74 libpython3.9.dylib 0x11b777a74 _PyEval_EvalFrameDefault + 25572 75 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 76 libpython3.9.dylib 0x11b677419 _PyFunction_Vectorcall + 265 77 libpython3.9.dylib 0x11b77b10d call_function + 413 78 libpython3.9.dylib 0x11b777a74 _PyEval_EvalFrameDefault + 25572 79 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 80 libpython3.9.dylib 0x11b771591 PyEval_EvalCode + 81 81 libpython3.9.dylib 0x11b76e1bf builtin_exec + 623 82 libpython3.9.dylib 0x11b6c3b77 cfunction_vectorcall_FASTCALL + 199 83 libpython3.9.dylib 0x11b777ea8 _PyEval_EvalFrameDefault + 26648 84 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 85 libpython3.9.dylib 0x11b677419 _PyFunction_Vectorcall + 265 86 libpython3.9.dylib 0x11b77b10d call_function + 413 87 libpython3.9.dylib 0x11b777a74 _PyEval_EvalFrameDefault + 25572 88 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 89 libpython3.9.dylib 0x11b77b10d call_function + 413 90 libpython3.9.dylib 0x11b777a54 _PyEval_EvalFrameDefault + 25540 91 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 92 libpython3.9.dylib 0x11b77b10d call_function + 413 93 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 94 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 95 libpython3.9.dylib 0x11b77b10d call_function + 413 96 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 97 libpython3.9.dylib 0x11b677523 function_code_fastcall + 163 98 libpython3.9.dylib 0x11b678904 object_vacall + 356 99 libpython3.9.dylib 0x11b678b2a _PyObject_CallMethodIdObjArgs + 250 100 libpython3.9.dylib 0x11b7a1db9 PyImport_ImportModuleLevelObject + 1321 101 libpython3.9.dylib 0x11b7767fe _PyEval_EvalFrameDefault + 20846 102 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 103 libpython3.9.dylib 0x11b771591 PyEval_EvalCode + 81 104 libpython3.9.dylib 0x11b7c6d6f run_mod + 175 105 libpython3.9.dylib 0x11b7c5a3e PyRun_StringFlags + 158 106 libpython3.9.dylib 0x11b76e198 builtin_exec + 584 107 libpython3.9.dylib 0x11b6c3b77 cfunction_vectorcall_FASTCALL + 199 108 libpython3.9.dylib 0x11b77b10d call_function + 413 109 libpython3.9.dylib 0x11b777b06 _PyEval_EvalFrameDefault + 25718 110 libpython3.9.dylib 0x11b77bdf8 _PyEval_EvalCode + 2360 111 libpython3.9.dylib 0x11b771591 PyEval_EvalCode + 81 112 libpython3.9.dylib 0x11b7c6d6f run_mod + 175 113 libpython3.9.dylib 0x11b7c5a3e PyRun_StringFlags + 158 114 libPythonQt.dylib 0x10a4c5e12 PythonQt::evalScript(_object*, QString const&, int) + 194 115 libPythonQt.dylib 0x10a52b841 PythonQtObjectPtr::evalScript(QString const&, int) + 49 116 libCTKScriptingPythonCore.0.1.dylib 0x1056bdca3 ctkAbstractPythonManager::executeString(QString const&, ctkAbstractPythonManager::ExecuteStringMode) + 147 117 libCTKScriptingPythonCore.0.1.dylib 0x1056be292 ctkAbstractPythonManager::executeFile(QString const&) + 1410 118 libqSlicerBaseQTGUI.dylib 0x105b46f22 qSlicerPythonManager::executeInitializationScripts() + 146 119 libCTKScriptingPythonCore.0.1.dylib 0x1056bcb72 ctkAbstractPythonManager::initPythonQt(int) + 994 120 libCTKScriptingPythonCore.0.1.dylib 0x1056bcde6 ctkAbstractPythonManager::mainContext() + 70 121 libqSlicerBaseQTCore.dylib 0x1062b66ca qSlicerCoreApplicationPrivate::init() + 8618 122 libqSlicerBaseQTGUI.dylib 0x105ab4f38 qSlicerApplicationPrivate::init() + 168 123 libqSlicerBaseQTGUI.dylib 0x105ab6f20 qSlicerApplication::qSlicerApplication(int&, char**) + 192 124 Slicer 0x1053c728c main + 76 125 dyld 0x7ff8066c341f start + 1903

Thread 1: 0 libsystem_pthread.dylib 0x7ff806a18bb0 start_wqthread + 0

Thread 2: 0 libsystem_pthread.dylib 0x7ff806a18bb0 start_wqthread + 0

Thread 3: 0 libsystem_pthread.dylib 0x7ff806a18bb0 start_wqthread + 0

Thread 4: 0 libsystem_pthread.dylib 0x7ff806a18bb0 start_wqthread + 0

Thread 5: 0 libsystem_pthread.dylib 0x7ff806a18bb0 start_wqthread + 0

Thread 6: 0 libsystem_kernel.dylib 0x7ff8069e0fae __semwait_signal + 10 1 libsystem_c.dylib 0x7ff8068d3585 nanosleep + 196 2 libsystem_c.dylib 0x7ff8068d34bb usleep + 53 3 libSlicerBaseLogic.dylib 0x107465203 vtkSlicerApplicationLogic::ProcessProcessingTasks() + 83 4 libSlicerBaseLogic.dylib 0x107464d78 vtkSlicerApplicationLogic::ProcessingThreaderCallback(void*) + 40 5 libsystem_pthread.dylib 0x7ff806a1d1d3 _pthread_start + 125 6 libsystem_pthread.dylib 0x7ff806a18bd3 thread_start + 15

Thread 7: 0 libsystem_kernel.dylib 0x7ff8069e0fae __semwait_signal + 10 1 libsystem_c.dylib 0x7ff8068d3585 nanosleep + 196 2 libsystem_c.dylib 0x7ff8068d34bb usleep + 53 3 libSlicerBaseLogic.dylib 0x1074653d3 vtkSlicerApplicationLogic::ProcessNetworkingTasks() + 83 4 libSlicerBaseLogic.dylib 0x107464ed8 vtkSlicerApplicationLogic::NetworkingThreaderCallback(void*) + 40 5 libsystem_pthread.dylib 0x7ff806a1d1d3 _pthread_start + 125 6 libsystem_pthread.dylib 0x7ff806a18bd3 thread_start + 15

Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000001 rbx: 0x00007f89159b4a90 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0x00007f89159b4a90 rsi: 0x0000000000000000 rbp: 0x00007ff7bab71d00 rsp: 0x00007ff7bab71cc0 r8: 0x4578497265666675 r9: 0xffffffff00000000 r10: 0x000060000185a498 r11: 0x00007ff6918e6e9a r12: 0x0000000000000001 r13: 0x0000000000000000 r14: 0x0000600000c7f5a8 r15: 0x0000600000c7f5a0 rip: 0x000000012efde61b rfl: 0x0000000000010202 cr2: 0x000000012c9e0f50

Logical CPU: 2 Error Code: 0x00000000 Trap Number: 0

Thread 0 instruction stream: 5b 5b 2a 00 48 8b 75 c8-4c 89 ff e8 67 5b 2a 00 [[.H.u.L...g[. 48 8d 7d c8 e8 58 5b 2a-00 e8 ff 5a 2a 00 48 8d H.}..X[...Z.H. 7d c8 48 8d 55 d0 48 89-c6 e8 31 5b 2a 00 48 8b }.H.U.H...1[.H. 75 c8 4c 89 f7 e8 3d 5b-2a 00 48 8d 7d c8 e8 2e u.L...=[.H.}... 5b 2a 00 49 8b 1e 48 8b-4b 30 4c 8b 6b 38 4d 8d [.I..H.K0L.k8M. 65 01 49 39 cc 7c 45 48-63 73 40 4c 89 e0 48 99 e.I9.|EHcs@L..H. [48]f7 fe 48 85 c0 78 34-48 ff c0 48 0f af f0 48 H..H..x4H..H...H <== 8d 56 ff 49 39 d5 7d 24-48 39 f1 7d 1b 48 89 55 .V.I9.}$H9.}.H.U c0 48 8b 0b 48 89 df 48-89 c6 ff 91 58 01 00 00 .H..H..H....X... 85 c0 48 8b 55 c0 74 04-48 89 53 38 4c 89 63 38 ..H.U.t.H.S8L.c8 48 8b 83 20 01 00 00 48-8b 40 30 4a c7 44 e8 08 H.. ...H.@0J.D.. 00 00 00 00 e8 ee 57 2a-00 84 c0 74 05 41 c6 47 ......W...t.A.G

Binary Images: (cropped because this part is too long)

VM Region Summary: ReadOnly portion of Libraries: Total=1.3G resident=0K(0%) swapped_out_or_unallocated=1.3G(100%) Writable regions: Total=585.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=585.4M(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Activity Tracing 256K 1 ColorSync 236K 24 Kernel Alloc Once 8K 1 MALLOC