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SlicerIGT / aigt

Deep learning software modules for image-guided medical procedures
http://www.slicerigt.org
BSD 3-Clause "New" or "Revised" License
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Add Sequence Segmentation module to Sequence extension #17

Closed ungi closed 1 year ago

ungi commented 3 years ago

Idea from an earlier issue: https://github.com/SlicerIGT/aigt/issues/3

Probably for this it would be good to have a Sequence Segmentation module, which would help setting up segmentation sequence (synchronized with the input image sequence) and some tools to help with propagating segmentation between time points (e.g., using intensity based registration). This module could also have an export feature to save both input image sequence and corresponding segmentation. This module should be probably in the Sequences extension.

However, in ultrasound sequences, we typically don't segment every item in the input sequence. We skip 5-10 frames between ones that we invest time in segmenting. The number of skipped frames varies within one sequence. When the ultrasound is not moving, we may skip a lot more frames.

ungi commented 1 year ago

This is implemented in Single Slice Segmentation module