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SmartDataAnalytics / BioKEEN

A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://github.com/pykeen/pykeen/
https://github.com/pykeen/pykeen/
MIT License
46 stars 4 forks source link

ModuleNotFoundError: No module named 'pybel.typing' #14

Closed mali-git closed 5 years ago

mali-git commented 5 years ago

biokeen start

Traceback (most recent call last): File "/Users/mehdi/virtual_envs/BioKEEN/bin/biokeen", line 11, in load_entry_point('biokeen', 'console_scripts', 'biokeen')() File "/Users/mehdi/virtual_envs/BioKEEN/lib/python3.6/site-packages/pkg_resources/init.py", line 487, in load_entry_point return get_distribution(dist).load_entry_point(group, name) File "/Users/mehdi/virtual_envs/BioKEEN/lib/python3.6/site-packages/pkg_resources/init.py", line 2728, in load_entry_point return ep.load() File "/Users/mehdi/virtual_envs/BioKEEN/lib/python3.6/site-packages/pkg_resources/init.py", line 2346, in load return self.resolve() File "/Users/mehdi/virtual_envs/BioKEEN/lib/python3.6/site-packages/pkg_resources/init.py", line 2352, in resolve module = import(self.module_name, fromlist=['name'], level=0) File "/Users/mehdi/PycharmProjects/BioKEEN/src/biokeen/cli.py", line 13, in from biokeen.build import iterate_source_paths File "/Users/mehdi/PycharmProjects/BioKEEN/src/biokeen/build.py", line 13, in from .convert import to_pykeen_file File "/Users/mehdi/PycharmProjects/BioKEEN/src/biokeen/convert/init.py", line 5, in from .io import get_triple, to_pykeen_df, to_pykeen_file # noqa: F401 File "/Users/mehdi/PycharmProjects/BioKEEN/src/biokeen/convert/io.py", line 14, in from .converters import ( File "/Users/mehdi/PycharmProjects/BioKEEN/src/biokeen/convert/converters.py", line 13, in from pybel.typing import EdgeData ModuleNotFoundError: No module named 'pybel.typing'