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SmileiPIC / Smilei

Particle-in-cell code for plasma simulation
https://smileipic.github.io/Smilei
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Compilation error on Comet (San Diego Supercomputer Center) #152

Closed deuterium33 closed 5 years ago

deuterium33 commented 5 years ago

Dear Smilei developers,

I try to compile Simlei on the Comet cluster of the San Diego Supercomputer Center. I paste here the content of the commands for the compilation.

git describe --all --long

heads/master

make env

SMILEICXX : /opt/mvapich2/intel/ib/bin/mpicxx PYTHONEXE : python MPIVERSION : VERSION : v4.1-558-g3130d28f-master OPENMP_FLAG : -openmp -D_OMP HDF5_ROOT_DIR : /opt/hdf5/intel/openmpi_ib SITEDIR : /home/mbaillyg/.local/lib/python2.7/site-packages PY_CXXFLAGS : -I/opt/python/include/python2.7 -I/opt/python/include/python2.7 -I/opt/python/lib/python2.7/site-packages/numpy/core/include -DSMILEI_USE_NUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION PY_LDFLAGS : -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic CXXFLAGS : -D__VERSION=\"v4.1-558-g3130d28f-master\" -D_VECTO -std=c++11 -Wall -I/opt/hdf5/intel/openmpi_ib/include -Isrc -Isrc/Pusher -Isrc/picsar_interface -Isrc/MovWindow -Isrc/Collisions -Isrc/Interpolator -Isrc/Checkpoint -Isrc/Species -Isrc/ElectroMagnBC -Isrc/SmileiMPI -Isrc/MultiphotonBreitWheeler -Isrc/ElectroMagn -Isrc/Projector -Isrc/Tools -Isrc/Diagnostic -Isrc/Profiles -Isrc/Field -Isrc/Params -Isrc/Python -Isrc/Ionization -Isrc/Patch -Isrc/Radiation -Isrc/ElectroMagnSolver -Isrc/DomainDecomposition -Ibuild/src/Python -I/opt/python/include/python2.7 -I/opt/python/include/python2.7 -I/opt/python/lib/python2.7/site-packages/numpy/core/include -DSMILEI_USE_NUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -D_VECTO -O3 -g -openmp -D_OMP LDFLAGS : -L/opt/hdf5/intel/openmpi_ib/lib -lhdf5 -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -lm -openmp -D_OMP

make config=verbose

... Compiling src/Checkpoint/Checkpoint.cpp /opt/mvapich2/intel/ib/bin/mpicxx -DVERSION=\"v4.1-558-g3130d28f-master\" -D_VECTO -std=c++11 -Wall -I/opt/hdf5/intel/openmpi_ib/include -Isrc -Isrc/Pusher -Isrc/picsar_interface -Isrc/MovWindow -Isrc/Collisions -Isrc/Interpolator -Isrc/Checkpoint -Isrc/Species -Isrc/ElectroMagnBC -Isrc/SmileiMPI -Isrc/MultiphotonBreitWheeler -Isrc/ElectroMagn -Isrc/Projector -Isrc/Tools -Isrc/Diagnostic -Isrc/Profiles -Isrc/Field -Isrc/Params -Isrc/Python -Isrc/Ionization -Isrc/Patch -Isrc/Radiation -Isrc/ElectroMagnSolver -Isrc/DomainDecomposition -Ibuild/src/Python -I/opt/python/include/python2.7 -I/opt/python/include/python2.7 -I/opt/python/lib/python2.7/site-packages/numpy/core/include -DSMILEI_USE_NUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -D_VECTO -O3 -g -openmp -D_OMP -c src/Checkpoint/Checkpoint.cpp -o build/src/Checkpoint/Checkpoint.o In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): /opt/gnu/gcc/include/c++/4.9.2/bits/alloc_traits.h(248): error: expected a ">" = typename __construct_helper<_Tp, _Args...>::type; ^ In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): detected during instantiation of type "std::allocator_traits<_Alloc>::has_construct<_Tp, _Args...>" at line 251 In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7):

In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): /opt/gnu/gcc/include/c++/4.9.2/type_traits(130): error: not a class or struct name : public _B1 ^ In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): detected during: In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): instantiation of class "std::_and<_B1> [with _B1=]" at line 1957 In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): instantiation of type "std::_Require<>" at line 251 of "/opt/gnu/gcc/include/c++/4.9.2/bits/alloc_traits.h" In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7):

In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): /opt/gnu/gcc/include/c++/4.9.2/type_traits(1957): error: class "std::_and<>" has no member "value" using _Require = typename enable_if<_and<_Cond...>::value>::type; ^ In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): detected during instantiation of type "std::_Require<>" at line 251 of "/opt/gnu/gcc/include/c++/4.9.2/bits/alloc_traits.h" In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7):

In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): /opt/gnu/gcc/include/c++/4.9.2/type_traits(1957): error: class "std::enable_if<, void>" has no member "type" using _Require = typename enable_if<_and<_Cond...>::value>::type; ^ In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7): detected during instantiation of type "std::_Require<>" at line 251 of "/opt/gnu/gcc/include/c++/4.9.2/bits/alloc_traits.h" In file included from /opt/gnu/gcc/include/c++/4.9.2/ext/alloc_traits.h(36), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_construct.h(61), from /opt/gnu/gcc/include/c++/4.9.2/vector(62), from src/Checkpoint/Checkpoint.h(11), from src/Checkpoint/Checkpoint.cpp(7):

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(48), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/mm3dnow.h(132): error: identifier "builtin_ia32_pfrsqit1" is undefined return (m64)builtin_ia32_pfrsqit1 ((v2sf)A, (v2sf)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(44): error: identifier "builtin_ia32_vfmaddps" is undefined return (m128) builtin_ia32_vfmaddps ((v4sf)A, (v4sf)B, (v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(50): error: identifier "builtin_ia32_vfmaddpd" is undefined return (m128d) builtin_ia32_vfmaddpd ((v2df)A, (v2df)B, (v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(56): error: identifier "builtin_ia32_vfmaddss" is undefined return (m128) builtin_ia32_vfmaddss ((v4sf)A, (v4sf)B, (v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(62): error: identifier "builtin_ia32_vfmaddsd" is undefined return (m128d) builtin_ia32_vfmaddsd ((v2df)A, (v2df)B, (v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(69): error: identifier "builtin_ia32_vfmaddps" is undefined return (m128) builtin_ia32_vfmaddps ((v4sf)A, (v4sf)B, -(v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(75): error: identifier "builtin_ia32_vfmaddpd" is undefined return (m128d) builtin_ia32_vfmaddpd ((v2df)A, (v2df)B, -(v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(81): error: identifier "builtin_ia32_vfmaddss" is undefined return (m128) builtin_ia32_vfmaddss ((v4sf)A, (v4sf)B, -(v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(87): error: identifier "builtin_ia32_vfmaddsd" is undefined return (m128d) builtin_ia32_vfmaddsd ((v2df)A, (v2df)B, -(v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(93): error: identifier "builtin_ia32_vfmaddps" is undefined return (m128) builtin_ia32_vfmaddps (-(v4sf)A, (v4sf)B, (v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(99): error: identifier "builtin_ia32_vfmaddpd" is undefined return (m128d) builtin_ia32_vfmaddpd (-(v2df)A, (v2df)B, (v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(105): error: identifier "builtin_ia32_vfmaddss" is undefined return (m128) builtin_ia32_vfmaddss (-(v4sf)A, (v4sf)B, (v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(111): error: identifier "builtin_ia32_vfmaddsd" is undefined return (m128d) builtin_ia32_vfmaddsd (-(v2df)A, (v2df)B, (v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(117): error: identifier "builtin_ia32_vfmaddps" is undefined return (m128) builtin_ia32_vfmaddps (-(v4sf)A, (v4sf)B, -(v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(123): error: identifier "builtin_ia32_vfmaddpd" is undefined return (m128d) builtin_ia32_vfmaddpd (-(v2df)A, (v2df)B, -(v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(129): error: identifier "builtin_ia32_vfmaddss" is undefined return (m128) builtin_ia32_vfmaddss (-(v4sf)A, (v4sf)B, -(v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(135): error: identifier "builtin_ia32_vfmaddsd" is undefined return (m128d) builtin_ia32_vfmaddsd (-(v2df)A, (v2df)B, -(v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(141): error: identifier "builtin_ia32_vfmaddsubps" is undefined return (m128) builtin_ia32_vfmaddsubps ((v4sf)A, (v4sf)B, (v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(147): error: identifier "builtin_ia32_vfmaddsubpd" is undefined return (m128d) builtin_ia32_vfmaddsubpd ((v2df)A, (v2df)B, (v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(153): error: identifier "builtin_ia32_vfmaddsubps" is undefined return (m128) builtin_ia32_vfmaddsubps ((v4sf)A, (v4sf)B, -(v4sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(159): error: identifier "builtin_ia32_vfmaddsubpd" is undefined return (m128d) builtin_ia32_vfmaddsubpd ((v2df)A, (v2df)B, -(v2df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(166): error: identifier "builtin_ia32_vfmaddps256" is undefined return (m256) builtin_ia32_vfmaddps256 ((v8sf)A, (v8sf)B, (v8sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(172): error: identifier "builtin_ia32_vfmaddpd256" is undefined return (m256d) builtin_ia32_vfmaddpd256 ((v4df)A, (v4df)B, (v4df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(179): error: identifier "builtin_ia32_vfmaddps256" is undefined return (m256) builtin_ia32_vfmaddps256 ((v8sf)A, (v8sf)B, -(v8sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(185): error: identifier "builtin_ia32_vfmaddpd256" is undefined return (m256d) builtin_ia32_vfmaddpd256 ((v4df)A, (v4df)B, -(v4df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(191): error: identifier "builtin_ia32_vfmaddps256" is undefined return (m256) builtin_ia32_vfmaddps256 (-(v8sf)A, (v8sf)B, (v8sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(197): error: identifier "builtin_ia32_vfmaddpd256" is undefined return (m256d) builtin_ia32_vfmaddpd256 (-(v4df)A, (v4df)B, (v4df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(203): error: identifier "builtin_ia32_vfmaddps256" is undefined return (m256) builtin_ia32_vfmaddps256 (-(v8sf)A, (v8sf)B, -(v8sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(209): error: identifier "builtin_ia32_vfmaddpd256" is undefined return (m256d) builtin_ia32_vfmaddpd256 (-(v4df)A, (v4df)B, -(v4df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(215): error: identifier "builtin_ia32_vfmaddsubps256" is undefined return (m256) builtin_ia32_vfmaddsubps256 ((v8sf)A, (v8sf)B, (v8sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(221): error: identifier "builtin_ia32_vfmaddsubpd256" is undefined return (m256d) builtin_ia32_vfmaddsubpd256 ((v4df)A, (v4df)B, (v4df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(227): error: identifier "builtin_ia32_vfmaddsubps256" is undefined return (m256) builtin_ia32_vfmaddsubps256 ((v8sf)A, (v8sf)B, -(v8sf)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(50), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/fma4intrin.h(233): error: identifier "builtin_ia32_vfmaddsubpd256" is undefined return (m256d) builtin_ia32_vfmaddsubpd256 ((v4df)A, (v4df)B, -(v4df)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(43): error: identifier "builtin_ia32_vpmacssww" is undefined return (m128i) builtin_ia32_vpmacssww ((v8hi)A,(v8hi)B, (v8hi)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(49): error: identifier "builtin_ia32_vpmacsww" is undefined return (m128i) builtin_ia32_vpmacsww ((v8hi)A, (v8hi)B, (v8hi)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(55): error: identifier "builtin_ia32_vpmacsswd" is undefined return (m128i) builtin_ia32_vpmacsswd ((v8hi)A, (v8hi)B, (v4si)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(61): error: identifier "builtin_ia32_vpmacswd" is undefined return (m128i) builtin_ia32_vpmacswd ((v8hi)A, (v8hi)B, (v4si)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(67): error: identifier "builtin_ia32_vpmacssdd" is undefined return (m128i) builtin_ia32_vpmacssdd ((v4si)A, (v4si)B, (v4si)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(73): error: identifier "builtin_ia32_vpmacsdd" is undefined return (m128i) builtin_ia32_vpmacsdd ((v4si)A, (v4si)B, (v4si)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(79): error: identifier "builtin_ia32_vpmacssdql" is undefined return (m128i) builtin_ia32_vpmacssdql ((v4si)A, (v4si)B, (v2di)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(85): error: identifier "builtin_ia32_vpmacsdql" is undefined return (m128i) builtin_ia32_vpmacsdql ((v4si)A, (v4si)B, (v2di)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(91): error: identifier "builtin_ia32_vpmacssdqh" is undefined return (m128i) builtin_ia32_vpmacssdqh ((v4si)A, (v4si)B, (v2di)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(97): error: identifier "builtin_ia32_vpmacsdqh" is undefined return (m128i) builtin_ia32_vpmacsdqh ((v4si)A, (v4si)B, (v2di)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(103): error: identifier "builtin_ia32_vpmadcsswd" is undefined return (m128i) builtin_ia32_vpmadcsswd ((v8hi)A,(v8hi)B,(v4si)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(109): error: identifier "builtin_ia32_vpmadcswd" is undefined return (m128i) builtin_ia32_vpmadcswd ((v8hi)A,(v8hi)B,(v4si)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(116): error: identifier "builtin_ia32_vphaddbw" is undefined return (m128i) builtin_ia32_vphaddbw ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(122): error: identifier "builtin_ia32_vphaddbd" is undefined return (m128i) builtin_ia32_vphaddbd ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(128): error: identifier "builtin_ia32_vphaddbq" is undefined return (m128i) builtin_ia32_vphaddbq ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(134): error: identifier "builtin_ia32_vphaddwd" is undefined return (m128i) builtin_ia32_vphaddwd ((v8hi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(140): error: identifier "builtin_ia32_vphaddwq" is undefined return (m128i) builtin_ia32_vphaddwq ((v8hi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(146): error: identifier "builtin_ia32_vphadddq" is undefined return (m128i) builtin_ia32_vphadddq ((v4si)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(152): error: identifier "builtin_ia32_vphaddubw" is undefined return (m128i) builtin_ia32_vphaddubw ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(158): error: identifier "builtin_ia32_vphaddubd" is undefined return (m128i) builtin_ia32_vphaddubd ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(164): error: identifier "builtin_ia32_vphaddubq" is undefined return (m128i) builtin_ia32_vphaddubq ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(170): error: identifier "builtin_ia32_vphadduwd" is undefined return (m128i) builtin_ia32_vphadduwd ((v8hi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(176): error: identifier "builtin_ia32_vphadduwq" is undefined return (m128i) builtin_ia32_vphadduwq ((v8hi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(182): error: identifier "builtin_ia32_vphaddudq" is undefined return (m128i) builtin_ia32_vphaddudq ((v4si)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(188): error: identifier "builtin_ia32_vphsubbw" is undefined return (m128i) builtin_ia32_vphsubbw ((v16qi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(194): error: identifier "builtin_ia32_vphsubwd" is undefined return (m128i) builtin_ia32_vphsubwd ((v8hi)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(200): error: identifier "builtin_ia32_vphsubdq" is undefined return (m128i) builtin_ia32_vphsubdq ((v4si)__A); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(208): error: identifier "builtin_ia32_vpcmov" is undefined return (m128i) builtin_ia32_vpcmov (A, B, C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(214): error: identifier "builtin_ia32_vpperm" is undefined return (m128i) builtin_ia32_vpperm ((v16qi)A, (v16qi)B, (v16qi)__C); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(223): error: identifier "builtin_ia32_vprotb" is undefined return (m128i) builtin_ia32_vprotb ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(229): error: identifier "builtin_ia32_vprotw" is undefined return (m128i) builtin_ia32_vprotw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(235): error: identifier "builtin_ia32_vprotd" is undefined return (m128i) builtin_ia32_vprotd ((v4si)A, (v4si)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(241): error: identifier "builtin_ia32_vprotq" is undefined return (m128i) builtin_ia32_vprotq ((v2di)A, (v2di)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(250): error: identifier "builtin_ia32_vprotbi" is undefined return (m128i) builtin_ia32_vprotbi ((v16qi)A, B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(256): error: identifier "builtin_ia32_vprotwi" is undefined return (m128i) builtin_ia32_vprotwi ((v8hi)A, B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(262): error: identifier "builtin_ia32_vprotdi" is undefined return (m128i) builtin_ia32_vprotdi ((v4si)A, B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(268): error: identifier "builtin_ia32_vprotqi" is undefined return (m128i) builtin_ia32_vprotqi ((v2di)A, B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(286): error: identifier "builtin_ia32_vpshlb" is undefined return (m128i) builtin_ia32_vpshlb ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(292): error: identifier "builtin_ia32_vpshlw" is undefined return (m128i) builtin_ia32_vpshlw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(298): error: identifier "builtin_ia32_vpshld" is undefined return (m128i) builtin_ia32_vpshld ((v4si)A, (v4si)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(304): error: identifier "builtin_ia32_vpshlq" is undefined return (m128i) builtin_ia32_vpshlq ((v2di)A, (v2di)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(311): error: identifier "builtin_ia32_vpshab" is undefined return (m128i) builtin_ia32_vpshab ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(317): error: identifier "builtin_ia32_vpshaw" is undefined return (m128i) builtin_ia32_vpshaw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(323): error: identifier "builtin_ia32_vpshad" is undefined return (m128i) builtin_ia32_vpshad ((v4si)A, (v4si)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(329): error: identifier "builtin_ia32_vpshaq" is undefined return (m128i) builtin_ia32_vpshaq ((v2di)A, (v2di)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(338): error: identifier "builtin_ia32_vpcomltub" is undefined return (m128i) builtin_ia32_vpcomltub ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(344): error: identifier "builtin_ia32_vpcomleub" is undefined return (m128i) builtin_ia32_vpcomleub ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(350): error: identifier "builtin_ia32_vpcomgtub" is undefined return (m128i) builtin_ia32_vpcomgtub ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(356): error: identifier "builtin_ia32_vpcomgeub" is undefined return (m128i) builtin_ia32_vpcomgeub ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(362): error: identifier "builtin_ia32_vpcomequb" is undefined return (m128i) builtin_ia32_vpcomequb ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(368): error: identifier "builtin_ia32_vpcomnequb" is undefined return (m128i) builtin_ia32_vpcomnequb ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(374): error: identifier "builtin_ia32_vpcomfalseub" is undefined return (m128i) builtin_ia32_vpcomfalseub ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(380): error: identifier "builtin_ia32_vpcomtrueub" is undefined return (m128i) builtin_ia32_vpcomtrueub ((v16qi)A, (v16qi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(388): error: identifier "builtin_ia32_vpcomltuw" is undefined return (m128i) builtin_ia32_vpcomltuw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(394): error: identifier "builtin_ia32_vpcomleuw" is undefined return (m128i) builtin_ia32_vpcomleuw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(400): error: identifier "builtin_ia32_vpcomgtuw" is undefined return (m128i) builtin_ia32_vpcomgtuw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(406): error: identifier "builtin_ia32_vpcomgeuw" is undefined return (m128i) builtin_ia32_vpcomgeuw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(412): error: identifier "builtin_ia32_vpcomequw" is undefined return (m128i) builtin_ia32_vpcomequw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(418): error: identifier "builtin_ia32_vpcomnequw" is undefined return (m128i) builtin_ia32_vpcomnequw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(424): error: identifier "builtin_ia32_vpcomfalseuw" is undefined return (m128i) builtin_ia32_vpcomfalseuw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(430): error: identifier "builtin_ia32_vpcomtrueuw" is undefined return (m128i) builtin_ia32_vpcomtrueuw ((v8hi)A, (v8hi)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(438): error: identifier "builtin_ia32_vpcomltud" is undefined return (m128i) builtin_ia32_vpcomltud ((v4si)A, (v4si)__B); ^

In file included from /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/x86intrin.h(52), from /opt/gnu/gcc/include/c++/4.9.2/x86_64-unknown-linux-gnu/bits/opt_random.h(33), from /opt/gnu/gcc/include/c++/4.9.2/random(50), from /opt/gnu/gcc/include/c++/4.9.2/bits/stl_algo.h(66), from /opt/gnu/gcc/include/c++/4.9.2/algorithm(62), from src/Params/Params.h(26), from src/Checkpoint/Checkpoint.cpp(15): /opt/gnu/gcc/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/xopintrin.h(444): error: identifier "builtin_ia32_vpcomleud" is undefined return (m128i) builtin_ia32_vpcomleud ((v4si)A, (v4si)__B); ^

compilation aborted for src/Checkpoint/Checkpoint.cpp (code 4) make: *** [build/src/Checkpoint/Checkpoint.o] Error 4

echo $LD_LIBRARY_PATH

/opt/python/lib:/opt/hdf5/intel/mvapich2_ib/lib:/opt/gnu/gcc/lib64:/opt/gnu/gmp/lib:/opt/gnu/mpfr/lib:/opt/gnu/mpc/lib:/opt/gnu/lib:/opt/gnu/lib64:/opt/mvapich2/intel/ib/lib:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4:/opt/sdsc/lib

python -m sysconfig

Platform: "linux-x86_64" Python version: "2.7" Current installation scheme: "posix_prefix"

Paths: data = "/opt/python" include = "/opt/python/include/python2.7" platinclude = "/opt/python/include/python2.7" platlib = "/opt/python/lib/python2.7/site-packages" platstdlib = "/opt/python/lib/python2.7" purelib = "/opt/python/lib/python2.7/site-packages" scripts = "/opt/python/bin" stdlib = "/opt/python/lib/python2.7"

Variables: AC_APPLE_UNIVERSAL_BUILD = "0" AIX_GENUINE_CPLUSPLUS = "0" AR = "ar" ARFLAGS = "rc" ASDLGEN = "./Parser/asdl_c.py" ASDLGEN_FILES = "./Parser/asdl.py ./Parser/asdl_c.py" AST_ASDL = "./Parser/Python.asdl" AST_C = "Python/Python-ast.c" AST_C_DIR = "Python" AST_H = "Include/Python-ast.h" AST_H_DIR = "Include" ATHEOS_THREADS = "0" BASECFLAGS = "-fno-strict-aliasing" BASEMODLIBS = "" BEOS_THREADS = "0" BINDIR = "/opt/python/bin" BINLIBDEST = "/opt/python/lib/python2.7" BLDLIBRARY = "-L. -lpython2.7" BLDSHARED = "gcc -pthread -shared" BUILDEXE = "" BUILDPYTHON = "python" CC = "gcc -pthread" CCSHARED = "-fPIC" CFLAGS = "-fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes" CFLAGSFORSHARED = "-fPIC" CONFIGFILES = "configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in" CONFIG_ARGS = "'--enable-shared' '--prefix=/opt/python' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig'" CONFINCLUDEDIR = "/opt/python/include" CONFINCLUDEPY = "/opt/python/include/python2.7" COREPYTHONPATH = ":plat-linux2:lib-tk:lib-old" CPPFLAGS = "-I. -IInclude -I./Include" CXX = "g++ -pthread" C_THREADS = "0" DESTDIRS = "/opt/python /opt/python/lib /opt/python/lib/python2.7 /opt/python/lib/python2.7/lib-dynload" DESTLIB = "/opt/python/lib/python2.7" DESTPATH = "" DESTSHARED = "/opt/python/lib/python2.7/lib-dynload" DIRMODE = "755" DIST = "README ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in Include Lib Misc Demo Ext-dummy" DISTDIRS = "Include Lib Misc Demo Ext-dummy" DISTFILES = "README ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in" DLINCLDIR = "." DLLLIBRARY = "" DOUBLE_IS_ARM_MIXED_ENDIAN_IEEE754 = "0" DOUBLE_IS_BIG_ENDIAN_IEEE754 = "0" DOUBLE_IS_LITTLE_ENDIAN_IEEE754 = "1" DYNLOADFILE = "dynload_shlib.o" ENABLE_IPV6 = "1" ENSUREPIP = "no" EXE = "" EXEMODE = "755" EXTRAMACHDEPPATH = "" EXTRAPLATDIR = "" EXTRATESTOPTS = "" EXTRA_CFLAGS = "" FILEMODE = "644" FLOCK_NEEDS_LIBBSD = "0" GETPGRP_HAVE_ARG = "0" GETTIMEOFDAY_NO_TZ = "0" GLHACK = "-Dclear=GLclear" GNULD = "yes" GRAMMAR_C = "Python/graminit.c" GRAMMAR_H = "Include/graminit.h" GRAMMAR_INPUT = "./Grammar/Grammar" HAVE_ACOSH = "1" HAVE_ADDRINFO = "1" HAVE_ALARM = "1" HAVE_ALLOCA_H = "1" HAVE_ALTZONE = "0" HAVE_ASINH = "1" HAVE_ASM_TYPES_H = "1" HAVE_ATANH = "1" HAVE_ATTRIBUTE_FORMAT_PARSETUPLE = "0" HAVE_BIND_TEXTDOMAIN_CODESET = "1" HAVE_BLUETOOTH_BLUETOOTH_H = "0" HAVE_BLUETOOTH_H = "0" HAVE_BROKEN_NICE = "0" HAVE_BROKEN_PIPE_BUF = "0" HAVE_BROKEN_POLL = "0" HAVE_BROKEN_POSIX_SEMAPHORES = "0" HAVE_BROKEN_PTHREAD_SIGMASK = "0" HAVE_BROKEN_SEM_GETVALUE = "0" HAVE_BROKEN_UNSETENV = "0" HAVE_C99_BOOL = "1" HAVE_CHFLAGS = "0" HAVE_CHOWN = "1" HAVE_CHROOT = "1" HAVE_CLOCK = "1" HAVE_CONFSTR = "1" HAVE_CONIO_H = "0" HAVE_COPYSIGN = "1" HAVE_CTERMID = "1" HAVE_CTERMID_R = "0" HAVE_CURSES_H = "1" HAVE_CURSES_IS_TERM_RESIZED = "1" HAVE_CURSES_RESIZETERM = "1" HAVE_CURSES_RESIZE_TERM = "1" HAVE_DECL_ISFINITE = "1" HAVE_DECL_ISINF = "1" HAVE_DECL_ISNAN = "1" HAVE_DECL_TZNAME = "0" HAVE_DEVICE_MACROS = "1" HAVE_DEV_PTC = "0" HAVE_DEV_PTMX = "1" HAVE_DIRECT_H = "0" HAVE_DIRENT_H = "1" HAVE_DLFCN_H = "1" HAVE_DLOPEN = "1" HAVE_DUP2 = "1" HAVE_DYNAMIC_LOADING = "1" HAVE_EPOLL = "1" HAVE_ERF = "1" HAVE_ERFC = "1" HAVE_ERRNO_H = "1" HAVE_EXECV = "1" HAVE_EXPM1 = "1" HAVE_FCHDIR = "1" HAVE_FCHMOD = "1" HAVE_FCHOWN = "1" HAVE_FCNTL_H = "1" HAVE_FDATASYNC = "1" HAVE_FINITE = "1" HAVE_FLOCK = "1" HAVE_FORK = "1" HAVE_FORKPTY = "1" HAVE_FPATHCONF = "1" HAVE_FSEEK64 = "0" HAVE_FSEEKO = "1" HAVE_FSTATVFS = "1" HAVE_FSYNC = "1" HAVE_FTELL64 = "0" HAVE_FTELLO = "1" HAVE_FTIME = "1" HAVE_FTRUNCATE = "1" HAVE_GAI_STRERROR = "1" HAVE_GAMMA = "1" HAVE_GCC_ASM_FOR_X87 = "1" HAVE_GETADDRINFO = "1" HAVE_GETCWD = "1" HAVE_GETC_UNLOCKED = "1" HAVE_GETENTROPY = "0" HAVE_GETGROUPS = "1" HAVE_GETHOSTBYNAME = "0" HAVE_GETHOSTBYNAME_R = "1" HAVE_GETHOSTBYNAME_R_3_ARG = "0" HAVE_GETHOSTBYNAME_R_5_ARG = "0" HAVE_GETHOSTBYNAME_R_6_ARG = "1" HAVE_GETITIMER = "1" HAVE_GETLOADAVG = "1" HAVE_GETLOGIN = "1" HAVE_GETNAMEINFO = "1" HAVE_GETPAGESIZE = "1" HAVE_GETPEERNAME = "1" HAVE_GETPGID = "1" HAVE_GETPGRP = "1" HAVE_GETPID = "1" HAVE_GETPRIORITY = "1" HAVE_GETPWENT = "1" HAVE_GETRESGID = "1" HAVE_GETRESUID = "1" HAVE_GETSID = "1" HAVE_GETSPENT = "1" HAVE_GETSPNAM = "1" HAVE_GETTIMEOFDAY = "1" HAVE_GETWD = "1" HAVE_GRP_H = "1" HAVE_HSTRERROR = "1" HAVE_HYPOT = "1" HAVE_IEEEFP_H = "0" HAVE_INET_ATON = "1" HAVE_INET_PTON = "1" HAVE_INITGROUPS = "1" HAVE_INT32_T = "1" HAVE_INT64_T = "1" HAVE_INTTYPES_H = "1" HAVE_IO_H = "0" HAVE_KILL = "1" HAVE_KILLPG = "1" HAVE_KQUEUE = "0" HAVE_LANGINFO_H = "1" HAVE_LARGEFILE_SUPPORT = "0" HAVE_LCHFLAGS = "0" HAVE_LCHMOD = "0" HAVE_LCHOWN = "1" HAVE_LGAMMA = "1" HAVE_LIBDL = "1" HAVE_LIBDLD = "0" HAVE_LIBIEEE = "0" HAVE_LIBINTL_H = "1" HAVE_LIBREADLINE = "1" HAVE_LIBRESOLV = "0" HAVE_LIBUTIL_H = "0" HAVE_LINK = "1" HAVE_LINUX_NETLINK_H = "1" HAVE_LINUX_TIPC_H = "1" HAVE_LOG1P = "1" HAVE_LONG_DOUBLE = "1" HAVE_LONG_LONG = "1" HAVE_LSTAT = "1" HAVE_MAKEDEV = "1" HAVE_MEMMOVE = "1" HAVE_MEMORY_H = "1" HAVE_MKFIFO = "1" HAVE_MKNOD = "1" HAVE_MKTIME = "1" HAVE_MMAP = "1" HAVE_MREMAP = "1" HAVE_NCURSES_H = "1" HAVE_NDIR_H = "0" HAVE_NETPACKET_PACKET_H = "1" HAVE_NICE = "1" HAVE_OPENPTY = "1" HAVE_OSX105_SDK = "0" HAVE_PATHCONF = "1" HAVE_PAUSE = "1" HAVE_PLOCK = "0" HAVE_POLL = "1" HAVE_POLL_H = "1" HAVE_PROCESS_H = "0" HAVE_PROTOTYPES = "1" HAVE_PTH = "0" HAVE_PTHREAD_ATFORK = "1" HAVE_PTHREAD_DESTRUCTOR = "0" HAVE_PTHREAD_H = "1" HAVE_PTHREAD_INIT = "0" HAVE_PTHREAD_SIGMASK = "1" HAVE_PTY_H = "1" HAVE_PUTENV = "1" HAVE_RAND_EGD = "1" HAVE_READLINK = "1" HAVE_REALPATH = "1" HAVE_RL_CALLBACK = "1" HAVE_RL_CATCH_SIGNAL = "1" HAVE_RL_COMPLETION_APPEND_CHARACTER = "1" HAVE_RL_COMPLETION_DISPLAY_MATCHES_HOOK = "1" HAVE_RL_COMPLETION_MATCHES = "1" HAVE_RL_COMPLETION_SUPPRESS_APPEND = "1" HAVE_RL_PRE_INPUT_HOOK = "1" HAVE_ROUND = "1" HAVE_SELECT = "1" HAVE_SEM_GETVALUE = "1" HAVE_SEM_OPEN = "1" HAVE_SEM_TIMEDWAIT = "1" HAVE_SEM_UNLINK = "1" HAVE_SETEGID = "1" HAVE_SETEUID = "1" HAVE_SETGID = "1" HAVE_SETGROUPS = "1" HAVE_SETITIMER = "1" HAVE_SETLOCALE = "1" HAVE_SETPGID = "1" HAVE_SETPGRP = "1" HAVE_SETREGID = "1" HAVE_SETRESGID = "1" HAVE_SETRESUID = "1" HAVE_SETREUID = "1" HAVE_SETSID = "1" HAVE_SETUID = "1" HAVE_SETVBUF = "1" HAVE_SHADOW_H = "1" HAVE_SIGACTION = "1" HAVE_SIGINTERRUPT = "1" HAVE_SIGNAL_H = "1" HAVE_SIGRELSE = "1" HAVE_SNPRINTF = "1" HAVE_SOCKADDR_SA_LEN = "0" HAVE_SOCKADDR_STORAGE = "1" HAVE_SOCKETPAIR = "1" HAVE_SPAWN_H = "1" HAVE_SSIZE_T = "1" HAVE_STATVFS = "1" HAVE_STAT_TV_NSEC = "1" HAVE_STAT_TV_NSEC2 = "0" HAVE_STDARG_PROTOTYPES = "1" HAVE_STDINT_H = "1" HAVE_STDLIB_H = "1" HAVE_STRDUP = "1" HAVE_STRFTIME = "1" HAVE_STRINGS_H = "1" HAVE_STRING_H = "1" HAVE_STROPTS_H = "0" HAVE_STRUCT_STAT_ST_BIRTHTIME = "0" HAVE_STRUCT_STAT_ST_BLKSIZE = "1" HAVE_STRUCT_STAT_ST_BLOCKS = "1" HAVE_STRUCT_STAT_ST_FLAGS = "0" HAVE_STRUCT_STAT_ST_GEN = "0" HAVE_STRUCT_STAT_ST_RDEV = "1" HAVE_STRUCT_TM_TM_ZONE = "1" HAVE_ST_BLOCKS = "1" HAVE_SYMLINK = "1" HAVE_SYSCONF = "1" HAVE_SYSEXITS_H = "1" HAVE_SYS_AUDIOIO_H = "0" HAVE_SYS_BSDTTY_H = "0" HAVE_SYS_DIR_H = "0" HAVE_SYS_EPOLL_H = "1" HAVE_SYS_EVENT_H = "0" HAVE_SYS_FILE_H = "1" HAVE_SYS_LOADAVG_H = "0" HAVE_SYS_LOCK_H = "0" HAVE_SYS_MKDEV_H = "0" HAVE_SYS_MODEM_H = "0" HAVE_SYS_NDIR_H = "0" HAVE_SYS_PARAM_H = "1" HAVE_SYS_POLL_H = "1" HAVE_SYS_RESOURCE_H = "1" HAVE_SYS_SELECT_H = "1" HAVE_SYS_SOCKET_H = "1" HAVE_SYS_STATVFS_H = "1" HAVE_SYS_STAT_H = "1" HAVE_SYS_TERMIO_H = "0" HAVE_SYS_TIMES_H = "1" HAVE_SYS_TIME_H = "1" HAVE_SYS_TYPES_H = "1" HAVE_SYS_UN_H = "1" HAVE_SYS_UTSNAME_H = "1" HAVE_SYS_WAIT_H = "1" HAVE_TCGETPGRP = "1" HAVE_TCSETPGRP = "1" HAVE_TEMPNAM = "1" HAVE_TERMIOS_H = "1" HAVE_TERM_H = "1" HAVE_TGAMMA = "1" HAVE_THREAD_H = "0" HAVE_TIMEGM = "1" HAVE_TIMES = "1" HAVE_TMPFILE = "1" HAVE_TMPNAM = "1" HAVE_TMPNAM_R = "1" HAVE_TM_ZONE = "1" HAVE_TRUNCATE = "1" HAVE_TZNAME = "0" HAVE_UCS4_TCL = "0" HAVE_UINT32_T = "1" HAVE_UINT64_T = "1" HAVE_UINTPTR_T = "1" HAVE_UNAME = "1" HAVE_UNISTD_H = "1" HAVE_UNSETENV = "1" HAVE_USABLE_WCHAR_T = "0" HAVE_UTIL_H = "0" HAVE_UTIMES = "1" HAVE_UTIME_H = "1" HAVE_WAIT3 = "1" HAVE_WAIT4 = "1" HAVE_WAITPID = "1" HAVE_WCHAR_H = "1" HAVE_WCSCOLL = "1" HAVE_WORKING_TZSET = "1" HAVE_ZLIB_COPY = "1" HAVEGETPTY = "0" HGBRANCH = "hg id -b ." HGTAG = "hg id -t ." HGVERSION = "hg id -i ." HOST_GNU_TYPE = "x86_64-unknown-linux-gnu" HURD_C_THREADS = "0" INCLDIRSTOMAKE = "/opt/python/include /opt/python/include /opt/python/include/python2.7 /opt/python/include/python2.7" INCLUDEDIR = "/opt/python/include" INCLUDEPY = "/opt/python/include/python2.7" INSTALL = "/usr/bin/install -c" INSTALL_DATA = "/usr/bin/install -c -m 644" INSTALL_PROGRAM = "/usr/bin/install -c" INSTALL_SCRIPT = "/usr/bin/install -c" INSTALL_SHARED = "/usr/bin/install -c -m 555" INSTSONAME = "libpython2.7.so.1.0" LDCXXSHARED = "g++ -pthread -shared" LDFLAGS = "" LDLAST = "" LDLIBRARY = "libpython2.7.so" LDLIBRARYDIR = "" LDSHARED = "gcc -pthread -shared" LIBC = "" LIBDEST = "/opt/python/lib/python2.7" LIBDIR = "/opt/python/lib" LIBFFI_INCLUDEDIR = "" LIBM = "-lm" LIBOBJDIR = "Python/" LIBOBJS = "" LIBP = "/opt/python/lib/python2.7" LIBPC = "/opt/python/lib/pkgconfig" LIBPL = "/opt/python/lib/python2.7/config" LIBRARY = "libpython2.7.a" LIBRARY_OBJS = "\" LIBS = "-lpthread -ldl -lutil" LIBSUBDIRS = "lib-tk lib-tk/test lib-tk/test/test_tkinter \" LINKCC = "gcc -pthread" LINKFORSHARED = "-Xlinker -export-dynamic" LN = "ln" LOCALMODLIBS = "" MACHDEP = "linux2" MACHDEPPATH = ":plat-linux2" MACHDEPS = "plat-linux2" MACHDEP_OBJS = "" MACHDESTLIB = "/opt/python/lib/python2.7" MACH_C_THREADS = "0" MACOSX_DEPLOYMENT_TARGET = "" MAINCC = "gcc -pthread" MAJOR_IN_MKDEV = "0" MAJOR_IN_SYSMACROS = "0" MAKESETUP = "./Modules/makesetup" MANDIR = "/opt/python/share/man" MEMTESTOPTS = "-l -x test_subprocess test_io test_lib2to3 \ -x test_dl test_all__ test_fork1 \" MKDIR_P = "/bin/mkdir -p" MODLIBS = "" MODOBJS = "Modules/threadmodule.o Modules/signalmodule.o Modules/posixmodule.o Modules/errnomodule.o Modules/pwdmodule.o Modules/_sre.o Modules/_codecsmodule.o Modules/_weakref.o Modules/zipimport.o Modules/symtablemodule.o Modules/xxsubtype.o" MODULE_OBJS = "\" MULTIARCH = "" MVWDELCH_IS_EXPRESSION = "1" OBJECT_OBJS = "\" OLDPATH = ":lib-old" OPT = "-DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes" OTHER_LIBTOOL_OPT = "" PACKAGE_BUGREPORT = "0" PACKAGE_NAME = "0" PACKAGE_STRING = "0" PACKAGE_TARNAME = "0" PACKAGE_URL = "0" PACKAGE_VERSION = "0" PARSER_HEADERS = "\" PARSER_OBJS = "\ Parser/myreadline.o Parser/tokenizer.o" PGEN = "Parser/pgen" PGENOBJS = "\ \" PGENSRCS = "\ \" PGOBJS = "\" PGSRCS = "\" PLATDIR = "plat-linux2" PLATMACDIRS = "plat-mac plat-mac/Carbon plat-mac/lib-scriptpackages \" PLATMACPATH = ":plat-mac:plat-mac/lib-scriptpackages" POBJS = "\" POSIX_SEMAPHORES_NOT_ENABLED = "0" PROFILE_TASK = "./Tools/pybench/pybench.py -n 2 --with-gc --with-syscheck" PSRCS = "\" PTHREAD_SYSTEM_SCHED_SUPPORTED = "1" PURIFY = "" PYLONG_BITS_IN_DIGIT = "0" PYTHON = "python" PYTHONFRAMEWORK = "" PYTHONFRAMEWORKDIR = "no-framework" PYTHONFRAMEWORKINSTALLDIR = "" PYTHONFRAMEWORKPREFIX = "" PYTHONPATH = ":plat-linux2:lib-tk:lib-old" PYTHON_FOR_BUILD = "./python -E" PYTHON_HEADERS = "\" PYTHON_OBJS = "\" PY_CFLAGS = "-fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I. -IInclude -I./Include -fPIC -DPy_BUILD_CORE" PY_FORMAT_LONG_LONG = ""ll"" PY_FORMAT_SIZE_T = ""z"" PY_UNICODE_TYPE = "unsigned short" Py_DEBUG = "0" Py_ENABLE_SHARED = "1" Py_UNICODE_SIZE = "2" Py_USING_UNICODE = "1" QUICKTESTOPTS = "-l -x test_subprocess test_io test_lib2to3 \" RANLIB = "ranlib" RESSRCDIR = "Mac/Resources/framework" RETSIGTYPE = "void" RUNSHARED = "LD_LIBRARY_PATH=/state/partition1/git/python-roll/BUILD/sdsc-python-27-2.7.10/Python-2.7.10:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4:/opt/gnu/gcc/lib64:/opt/gnu/gmp/lib:/opt/gnu/mpfr/lib:/opt/gnu/mpc/lib:/opt/gnu/lib:/opt/gnu/lib64:/opt/sdsc/lib" SCRIPTDIR = "/opt/python/lib" SETPGRP_HAVE_ARG = "0" SGI_ABI = "" SHELL = "/bin/sh" SHLIBS = "-lpthread -ldl -lutil" SHLIB_EXT = "".so"" SIGNAL_OBJS = "" SIGNED_RIGHT_SHIFT_ZERO_FILLS = "0" SITEPATH = "" SIZEOF_DOUBLE = "8" SIZEOF_FLOAT = "4" SIZEOF_FPOS_T = "16" SIZEOF_INT = "4" SIZEOF_LONG = "8" SIZEOF_LONG_DOUBLE = "16" SIZEOF_LONG_LONG = "8" SIZEOF_OFF_T = "8" SIZEOF_PID_T = "4" SIZEOF_PTHREAD_T = "8" SIZEOF_SHORT = "2" SIZEOF_SIZE_T = "8" SIZEOF_TIME_T = "8" SIZEOF_UINTPTR_T = "8" SIZEOF_VOID_P = "8" SIZEOF_WCHAR_T = "4" SIZEOFBOOL = "1" SO = ".so" SRCDIRS = "Parser Grammar Objects Python Modules Mac" SRC_GDB_HOOKS = "./Tools/gdb/libpython.py" STDC_HEADERS = "1" STRICT_SYSV_CURSES = "/ Don't use ncurses extensions /" STRINGLIB_HEADERS = "\" SUBDIRS = "" SUBDIRSTOO = "Include Lib Misc Demo" SVNVERSION = "echo Unversioned directory" SYSLIBS = "-lm" SYS_SELECT_WITH_SYS_TIME = "1" TANH_PRESERVES_ZERO_SIGN = "1" TCLTK_INCLUDES = "" TCLTK_LIBS = "" TESTOPTS = "-l" TESTPATH = "" TESTPROG = "./Lib/test/regrtest.py" TESTPYTHON = "LD_LIBRARY_PATH=/state/partition1/git/python-roll/BUILD/sdsc-python-27-2.7.10/Python-2.7.10:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4:/opt/gnu/gcc/lib64:/opt/gnu/gmp/lib:/opt/gnu/mpfr/lib:/opt/gnu/mpc/lib:/opt/gnu/lib:/opt/gnu/lib64:/opt/sdsc/lib ./python -Wd -3 -E -tt" TESTPYTHONOPTS = "" THREADOBJ = "Python/thread.o" TIME_WITH_SYS_TIME = "1" TKPATH = ":lib-tk" TM_IN_SYS_TIME = "0" UNICODE_OBJS = "Objects/unicodeobject.o Objects/unicodectype.o" UNIVERSALSDK = "" USE_TOOLBOX_OBJECT_GLUE = "0" VA_LIST_IS_ARRAY = "1" VERSION = "2.7" WANT_SIGFPE_HANDLER = "0" WANT_WCTYPE_FUNCTIONS = "0" WINDOW_HAS_FLAGS = "1" WITH_DOC_STRINGS = "1" WITH_DYLD = "0" WITH_LIBINTL = "0" WITH_NEXT_FRAMEWORK = "0" WITH_PYMALLOC = "1" WITH_THREAD = "1" WITH_TSC = "0" WITH_VALGRIND = "0" X87_DOUBLE_ROUNDING = "0" XMLLIBSUBDIRS = "xml xml/dom xml/etree xml/parsers xml/sax" abs_builddir = "/state/partition1/git/python-roll/BUILD/sdsc-python-27-2.7.10/Python-2.7.10" abs_srcdir = "/state/partition1/git/python-roll/BUILD/sdsc-python-27-2.7.10/Python-2.7.10" base = "/opt/python" build = "x86_64-unknown-linux-gnu" datarootdir = "/opt/python/share" exec_prefix = "/opt/python" host = "x86_64-unknown-linux-gnu" platbase = "/opt/python" prefix = "/opt/python" projectbase = "/opt/python/bin" py_version = "2.7.10" py_version_nodot = "27" py_version_short = "2.7" srcdir = "." userbase = "/home/mbaillyg/.local"

ldd smilei ldd: ./smilei: No such file or directory

The documentation of Comet is available here if needed: (https://portal.xsede.org/sdsc-comet )

Nothing urges, but if you have a clear idea of the issue, I would greatly appreciate. Thanks for your help!

xxirii commented 5 years ago

Dear @deuterium33,

Do you use the default environment ?

Can you do for me :

Normally you should use the Intel compiler behind these wrappers but it seems that the problem is related to GNU.

mccoys commented 5 years ago

Intel compilers can sometime use the gnu standard libraries. It could be that these libraries are too old (could be useful to try with gcc 5 or 6 at least). Or that the cluster should be setup with Intel's libraries. Do you have a system admin to help you with those?

deuterium33 commented 5 years ago

[mbaillyg@comet-ln2 Smilei]$ module list Currently Loaded Modulefiles: 1) gnutools/2.69 4) hdf5/1.8.14 7) gnu/4.9.2 2) intel/2013_sp1.2.144 5) mkl/11.1.2.144 3) mvapich2_ib/2.1 6) python/2.7.10

mpicxx -show icpc -fPIC -O3 -I/opt/mvapich2/intel/ib/include -L/opt/mvapich2/intel/ib/lib -lmpicxx -Wl,-rpath -Wl,/opt/mvapich2/intel/ib/lib -Wl,--enable-new-dtags -lmpi

mpicxx --version icpc (ICC) 14.0.2 20140120 Copyright (C) 1985-2014 Intel Corporation. All rights reserved.

Yes it used Intel's compiler, but as mentioned @mccoys, it uses gnu standard libraries too for some compilation part. Yet, the version it uses according to the pasted content of compilation on my last message is gcc 4.9.2. I don't have access to gcc 5 or 6 according to the available module list. I can contact the administrators to ask if it is available.

Best!

deuterium33 commented 5 years ago

By the way, here are the list of all available modules on Comet:

------------------------------------ /opt/modulefiles/mpi/.gnu ------------------------------------- intelmpi/2016.3.210(default) mvapich2_gdr/2.2 openmpi_ib/1.8.4(default) mvapich2_gdr/2.1(default) mvapich2_ib/2.1(default)

-------------------------------- /opt/modulefiles/applications/.gnu -------------------------------- atlas/3.10.2(default) hdf5/1.8.14(default) scalapack/2.0.2(default) boost/1.55.0(default) lapack/3.6.0(default) slepc/3.6.2(default) fftw/2.1.5 netcdf/3.6.2 sprng/2.0b(default) fftw/3.3.4(default) netcdf/4.3.2(default) sundials/2.6.2(default) gsl/1.16 p3dfft/2.7.4(default) superlu/4.2(default) gsl/2.1(default) parmetis/4.0.3(default) trilinos/11.12.1(default) hdf4/2.11(default) petsc/3.6.3(default)

----------------------------------- /opt/modulefiles/mpi/.intel ------------------------------------ intelmpi/2016.3.210(default) mvapich2_gdr/2.2 openmpi_ib/1.8.4(default) mvapich2_gdr/2.1(default) mvapich2_ib/2.1(default)

------------------------------- /opt/modulefiles/applications/.intel ------------------------------- atlas/3.10.2(default) lapack/3.6.0(default) scalapack/2.0.2(default) boost/1.55.0(default) mxml/2.9(default) slepc/3.6.2(default) fftw/2.1.5 netcdf/3.6.2 sprng/2.0b(default) fftw/3.3.4(default) netcdf/4.3.2(default) sundials/2.6.2(default) gsl/1.16 p3dfft/2.7.4(default) superlu/4.2(default) gsl/2.1(default) papi/5.4.1(default) tau/2.23(default) hdf4/2.11(default) parmetis/4.0.3(default) trilinos/11.12.1(default) hdf5/1.8.14(default) pdt/3.20(default) ipm/2.0.3(default) petsc/3.6.3(default)

------------------------------------ /opt/modulefiles/compilers ------------------------------------ cilk/5.4.6(default) intel/2013_sp1.2.144(default) mono/3.12.0(default) cmake/3.9.1(default) intel/2015.2.164 pgi/17.5(default) gnu/4.9.2(default) intel/2016.3.210 python/2.7.10(default) guile/2.0.11(default) julia/0.6.0(default)

---------------------------------- /opt/modulefiles/applications ----------------------------------- abaqus/6.11-2 idba-ud/1.1.1(default) abaqus/6.14-1(default) idl/8.4(default) abinit/8.4.2(default) jasper/1.900.1(default) abyss/2.0.2(default) lammps/20170331(default) amber/16(default) llvm/3.6.2(default) amber/18 mafft/7.187(default) apbs/1.5(default) matlab/2018a(default) bamtools/2.4.0(default) matt/1.00(default) bbcp/14.09.02.00.0(default) migrate/3.6.11(default) bbftp/3.2.1(default) migrate/3.6.8 bcftools/1.3(default) miRDeep2/0.0.7(default) beagle/2.1(default) miso/0.5.3(default) beast/1.8.0 mkl/11.1.2.144(default) beast/1.8.1 mkl/11.2.2.164 beast/1.8.2(default) mkl/11.3.3 beast2/2.1.3(default) molden/5.0.7(default) bedtools/2.25.0(default) mpc/1.0.3(default) bioperl/1.007002(default) mpfr/3.1.2(default) biopython/1.66(default) mpi4py/1.3.1(default) bismark/0.15.0(default) mpiblast/1.6.0(default) blast/2.3.0(default) namd/2.10(default) blat/35(default) namd/2.12 bowtie/1.1.2(default) namd/2.9 bowtie2/2.2.7(default) ncl_ncarg/6.2.1(default) bwa/0.7.13(default) ncview/2.1.7(default) bx-python/0.8.1(default) node/8.9.4(default) celera/8.3rc2(default) NucleoATAC/0.3.1(default) cp2k/4.1(default) nwchem/6.6(default) cpmd/3.17.1(default) octave/4.2.1(default) cuda/6.5 openbabel/2.3.2(default) cuda/7.0(default) picard/2.3.0(default) cuda/7.5 plink/1.9(default) cuda/8.0 polymake/2.14(default) cuda/9.2 proj/4.9.3(default) cufflinks/2.2.1(default) pysam/0.8.4(default) ddt/19.0.2(default) qchem/5.2(default) dendropy/4.0.3(default) qe/6.3(default) diamond/0.7.12(default) R/3.4.0(default) drive-data/6.2(default) randfold/2.0(default) edena/3.131028(default) rapidminer/7.1.0(default) eigen/3.2.7(default) raxml/8.2.3(default) eman2/2.1(default) relion/1.4(default) emboss/6.5.7(default) rseqc/2.6.4(default) fastqc/0.11.4(default) samtools/1.2 fasttree/2.1.8(default) samtools/1.3(default) fastx/0.0.14(default) scipy/2.7(default) frealign/9.11(default) siesta/4.0(default) fsa/1.15.9(default) singularity/2.6.1(default) gamess/2017.04(default) soapdenovo/240(default) garli/2.01(default) SOAPsnp/1.03(default) gateway-usage-reporting/2.1 spades/3.9.0(default) gaussian/09.D.01(default) spark/1.2.0 gaussian/16.B.01 spark/1.5.2(default) gdal/2.2.0(default) squid/1.9g(default) GenomeAnalysisTK/3.5 stacks/1.37(default) GenomeAnalysisTK/4.0.4.0(default) tophat/2.1.1(default) geos/3.6.1(default) trimmomatic/0.35(default) globus/5.2.5 trinity/2.1.1(default) gmap_gsnap/20151231(default) vasp/4.6 gmp/6.0.0a(default) vasp/5.4.4(default) gnutools/2.69(default) vcftools/0.1.14(default) grace/5.1.25(default) velvet/1.2.10(default) gromacs/2016.3(default) ViennaRNA/2.2.4(default) hadoop/1.2.1 visit/2.9.1(default) hadoop/2.6.0(default) vmd/1.9.3(default) hmmer/3.1b2(default) weka/3.7.12(default) htseq/0.6.1p1(default)

---------------------------------- /usr/share/Modules/modulefiles ---------------------------------- dot module-git module-info modules null use.own

mccoys commented 5 years ago

It seems that intel 2015 and 2016 are available. Maybe you have better luck ?

Your problem is an incompatibility between the intel compiler and the gnu libraries. Specifically the algorithm library. There is nothing we can do for you; this should be fixed by your admin.

deuterium33 commented 5 years ago

Very good point! It seems to work with intel 2015! I will check intel 2016 just for curiosity.

deuterium33 commented 5 years ago

Yes it works good. Thanks, I can close the issue.

deuterium33 commented 5 years ago

Dear developpers.

So the compilation with intel2015 went fine.

Still, I have now another issue with running smilei, which seems to be related with parallel HDF5 in the Lustre filesystem (or maybe it is something else I am missing). I plan to post the same issue to the Comet system administrators, but if you have some idea, I would appreciate.

./smilei tst1d_00_em_propagation.py

log.txt

Best!

deuterium33 commented 5 years ago

Update: If I launch it from a special scratch folder, I don't have anymore the issue. I suppose my home folder was not a proper location to run the tests ;)

Closed. Thanks!

mccoys commented 5 years ago

If you have a working configuration for COMET, could you post it here so that we can include it in the known configuration files ?

deuterium33 commented 5 years ago

Sure! Here is a draft of machine file for Comet:

#module purge
#module load gnutools
#module load intel mvapich2_ib
#module load python
#module load hdf5
#module switch intel/2013_sp1.2.144 intel/2015.2.164
#export HDF5_ROOT_DIR=/opt/hdf5/intel-2015.2.164/mvapich2_ib
#export OPENMP_FLAG=-openmp
#make machine=comet config=no_mpi_tm

CXXFLAGS +=  -xHost -O3 -ip  -inline-factor=1000 #-ipo

I am still investigating the optimization of mpi, since it seems to be pretty slow with the benchmarks tests I did so far (much slower on 2 nodes of 24 cores than on one node of 24 cores in another machine)...