Closed ycaophysics closed 4 years ago
iltommi
commented
4 years ago Hi, We have seen this behavior recently in some environments.
We have a fix for this that we didn't push until now because it seemed related to a strange anaconda/numpy/python installation.
I've pushed a fix for this. Could you check the latest master branch and report here?
ycaophysics
commented
4 years ago I'm not sure what you by checking the latest master branch. Do you mean git clone the new Smilei package again? Thanks
iltommi
commented
4 years ago Yes. Or if you already cloned Smilei, you can just type git pull inside the Smilei directory
ycaophysics
commented
4 years ago Yes I think the new one does compile. However, It shows many warning such as "unused variable" or "function may be used uninitialized". Does this matter? Thanks
iltommi
commented
4 years ago Good. Warnings are normal they are in part of the code that have not been cleaned yet but they're not harmful I will close this issue, if you have more problem feel free to reopen it!
Hi. I have a problem on compiling Smiliei on a new linux cluster. I used the instructions on "Install dependencies on Linux" as the the system openmpi is not compiled with --enable-mpi-thread-multiple. I manually installed the newest version of openmpi-4.0.5 and hdf5-1.12.0 (I don't know whether they are compatible. By the way how do you check if they are compatible or not?) I also activated the conda environment to ensure no messy thing happen on my main environment.
The error shows: Compile error: In file included from /public/home/yxcao/openmpi/include/mpi.h:233:0, from src/Tools/Tools.h:33, from src/Tools/PyTools.h:24, from src/Params/Params.cpp:8: src/Params/Params.cpp: In function ‘void smilei_import_array()’: /public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1531:151: error: return-statement with a value, in function returning 'void' [-fpermissive]
define import_array() {if (_import_array() < 0) {PyErr_Print(); PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray failed to import"); return NULL; } }
The other details are shown here. Thanks
git describe --all --long heads/master-0-ge65e854
make config=verbose makefile:162: *** "Unused parameters in config : verbose". Stop.
make env: SMILEICXX : /public/home/yxcao/openmpi/bin/mpicxx PYTHONEXE : /public/home/yxcao/anaconda3/envs/Smilei/bin/python MPIVERSION : VERSION : b'v4.4-710-ge65e854'-b'master' OPENMP_FLAG : -fopenmp -D_OMP HDF5_ROOT_DIR : /public/home/yxcao/hdf5 SITEDIR : /public/home/yxcao/.local/lib/python3.7/site-packages PY_CXXFLAGS : -I/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m -I/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m -I/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/site-packages/numpy/core/include -DSMILEI_USE_NUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION PY_LDFLAGS : -L/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/config-3.7m-x86_64-linux-gnu -lpython3.7m -lpthread -ldl -lutil -lrt -lm -Xlinker -export-dynamic CXXFLAGS : -D__VERSION=\"b'v4.4-710-ge65e854'-b'master'\" -D_VECTO -std=c++11 -Wall -I/public/home/yxcao/hdf5/include -Isrc -Isrc/ElectroMagnBC -Isrc/ParticleInjector -Isrc/Params -Isrc/Ionization -Isrc/Species -Isrc/Projector -Isrc/Particles -Isrc/Tools -Isrc/MovWindow -Isrc/picsar_interface -Isrc/Checkpoint -Isrc/Python -Isrc/MultiphotonBreitWheeler -Isrc/DomainDecomposition -Isrc/ElectroMagnSolver -Isrc/Merging -Isrc/Diagnostic -Isrc/Collisions -Isrc/Field -Isrc/Pusher -Isrc/Interpolator -Isrc/SmileiMPI -Isrc/ElectroMagn -Isrc/Radiation -Isrc/Patch -Isrc/Profiles -Ibuild/src/Python -I/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m -I/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m -I/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/site-packages/numpy/core/include -DSMILEI_USE_NUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -O3 -g -fopenmp -D_OMP LDFLAGS : -L/public/home/yxcao/hdf5/lib -lhdf5 -L/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/config-3.7m-x86_64-linux-gnu -lpython3.7m -lpthread -ldl -lutil -lrt -lm -Xlinker -export-dynamic -lm -fopenmp -D_OMP
echo $LD_LIBRARY_PATH: /public/software//mpi/openmpi/intel/2.1.2/lib:/public/home/yxcao/hdf5/lib:/public/home/yxcao/openmpi/lib:/public/software//compiler/intel/intel-compiler-2017.5.239/compiler/lib/intel64:/public/software//compiler/intel/intel-compiler-2017.5.239/mkl/lib/intel64:/public/software//compiler/intel/intel-compiler-2017.5.239/tbb/lib/intel64:
python -m sysconfig: Platform: "linux-x86_64" Python version: "3.7" Current installation scheme: "posix_prefix"
Paths: data = "/public/home/yxcao/anaconda3/envs/Smilei" include = "/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m" platinclude = "/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m" platlib = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/site-packages" platstdlib = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7" purelib = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/site-packages" scripts = "/public/home/yxcao/anaconda3/envs/Smilei/bin" stdlib = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7"
Variables: ABIFLAGS = "m" AC_APPLE_UNIVERSAL_BUILD = "0" AIX_GENUINE_CPLUSPLUS = "0" ANDROID_API_LEVEL = "0" AR = "ar" ARFLAGS = "rc" BASECFLAGS = "-Wsign-compare" BASECPPFLAGS = "" BASEMODLIBS = "" BINDIR = "/public/home/yxcao/anaconda3/envs/Smilei/bin" BINLIBDEST = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7" BLDLIBRARY = "-L. -lpython3.7m" BLDSHARED = "gcc -pthread -shared -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/" BUILDEXE = "" BUILDPYTHON = "python" BUILD_GNU_TYPE = "x86_64-pc-linux-gnu" BYTESTR_DEPS = "\" CC = "gcc -pthread -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -Wl,--sysroot=/" CCSHARED = "-fPIC" CFLAGS = "-Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes" CFLAGSFORSHARED = "-fPIC" CFLAGS_ALIASING = "" CFLAGS_NODIST = "" CONFIGFILES = "configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in" CONFIGURE_CFLAGS = "" CONFIGURE_CFLAGS_NODIST = "-std=c99 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers" CONFIGURE_CPPFLAGS = "-I/public/home/yxcao/anaconda3/envs/Smilei/include" CONFIGURE_LDFLAGS = "-L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/" CONFIG_ARGS = "'--enable-shared' '--enable-ipv6' '--with-ensurepip=no' '--prefix=/public/home/yxcao/anaconda3/envs/Smilei' '--with-tcltk-includes=-I/public/home/yxcao/anaconda3/envs/Smilei/include' '--with-tcltk-libs=-L/public/home/yxcao/anaconda3/envs/Smilei/lib -ltcl8.6 -ltk8.6' 'CPPFLAGS=-I/public/home/yxcao/anaconda3/envs/Smilei/include' 'LDFLAGS=-L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/' 'PKG_CONFIG_PATH=/public/home/yxcao/anaconda3/envs/Smilei/lib/pkgconfig'" CONFINCLUDEDIR = "/public/home/yxcao/anaconda3/envs/Smilei/include" CONFINCLUDEPY = "/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m" COREPYTHONPATH = ":" COVERAGE_INFO = "/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3/coverage.info" COVERAGE_REPORT = "/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3/lcov-report" COVERAGE_REPORT_OPTIONS = "--no-branch-coverage --title "CPython lcov report"" CPPFLAGS = "-I. -I./Include -I/public/home/yxcao/anaconda3/envs/Smilei/include" CXX = "g++ -pthread -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -Wl,--sysroot=/" DESTDIRS = "/public/home/yxcao/anaconda3/envs/Smilei /public/home/yxcao/anaconda3/envs/Smilei/lib /public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7 /public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/lib-dynload" DESTLIB = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7" DESTPATH = "" DESTSHARED = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/lib-dynload" DFLAGS = "" DIRMODE = "755" DIST = "README ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in Include Lib Misc Ext-dummy" DISTDIRS = "Include Lib Misc Ext-dummy" DISTFILES = "README ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in" DLINCLDIR = "." 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HAVE_SYS_SYSCALL_H = "1" HAVE_SYS_SYS_DOMAIN_H = "0" HAVE_SYS_TERMIO_H = "0" HAVE_SYS_TIMES_H = "1" HAVE_SYS_TIME_H = "1" HAVE_SYS_TYPES_H = "1" HAVE_SYS_UIO_H = "1" HAVE_SYS_UN_H = "1" HAVE_SYS_UTSNAME_H = "1" HAVE_SYS_WAIT_H = "1" HAVE_SYS_XATTR_H = "1" HAVE_TCGETPGRP = "1" HAVE_TCSETPGRP = "1" HAVE_TEMPNAM = "1" HAVE_TERMIOS_H = "1" HAVE_TERM_H = "1" HAVE_TGAMMA = "1" HAVE_TIMEGM = "1" HAVE_TIMES = "1" HAVE_TMPFILE = "1" HAVE_TMPNAM = "1" HAVE_TMPNAM_R = "1" HAVE_TM_ZONE = "1" HAVE_TRUNCATE = "1" HAVE_TZNAME = "0" HAVE_UCS4_TCL = "0" HAVE_UNAME = "1" HAVE_UNISTD_H = "1" HAVE_UNLINKAT = "1" HAVE_UNSETENV = "1" HAVE_USABLE_WCHAR_T = "0" HAVE_UTIL_H = "0" HAVE_UTIMENSAT = "0" HAVE_UTIMES = "1" HAVE_UTIME_H = "1" HAVE_WAIT3 = "1" HAVE_WAIT4 = "1" HAVE_WAITID = "1" HAVE_WAITPID = "1" HAVE_WCHAR_H = "1" HAVE_WCSCOLL = "1" HAVE_WCSFTIME = "1" HAVE_WCSXFRM = "1" HAVE_WMEMCMP = "1" HAVE_WORKING_TZSET = "1" HAVE_WRITEV = "1" HAVE_ZLIB_COPY = "1" HAVE__GETPTY = "0" HOST_GNU_TYPE = "x86_64-pc-linux-gnu" INCLDIRSTOMAKE = "/public/home/yxcao/anaconda3/envs/Smilei/include /public/home/yxcao/anaconda3/envs/Smilei/include /public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m /public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m" INCLUDEDIR = "/public/home/yxcao/anaconda3/envs/Smilei/include" INCLUDEPY = "/public/home/yxcao/anaconda3/envs/Smilei/include/python3.7m" INSTALL = "/usr/bin/install -c" INSTALL_DATA = "/usr/bin/install -c -m 644" INSTALL_PROGRAM = "/usr/bin/install -c" INSTALL_SCRIPT = "/usr/bin/install -c" INSTALL_SHARED = "/usr/bin/install -c -m 555" INSTSONAME = "libpython3.7m.so.1.0" IO_H = "Modules/_io/_iomodule.h" IO_OBJS = "\" LDCXXSHARED = "g++ -pthread -shared -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/" LDFLAGS = "-L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/" LDLAST = "" LDLIBRARY = "libpython3.7m.so" LDLIBRARYDIR = "" LDSHARED = "gcc -pthread -shared -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/" LDVERSION = "3.7m" LIBC = "" LIBDEST = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7" LIBDIR = "/public/home/yxcao/anaconda3/envs/Smilei/lib" LIBFFI_INCLUDEDIR = "" LIBM = "-lm" LIBOBJDIR = "Python/" LIBOBJS = "" LIBPC = "/public/home/yxcao/anaconda3/envs/Smilei/lib/pkgconfig" LIBPL = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/config-3.7m-x86_64-linux-gnu" LIBRARY = "libpython3.7m.a" LIBRARY_OBJS = "\" LIBRARY_OBJS_OMIT_FROZEN = "\" LIBS = "-lpthread -ldl -lutil -lrt" LIBSUBDIRS = "tkinter tkinter/test tkinter/test/test_tkinter \" LINKCC = "gcc -pthread -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -Wl,--sysroot/" LINKFORSHARED = "-Xlinker -export-dynamic" LIPO_32BIT_FLAGS = "" LLVM_PROF_ERR = "no" LLVM_PROF_FILE = "" LLVM_PROF_MERGER = "true" LN = "ln" LOCALMODLIBS = "" LOG1P_DROPS_ZERO_SIGN = "0" MACHDEP = "linux" MACHDEPPATH = ":" MACHDEP_OBJS = "" MACHDESTLIB = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7" MACOSX_DEPLOYMENT_TARGET = "" MAINCC = "gcc -pthread -B /public/home/yxcao/anaconda3/envs/Smilei/compiler_compat -Wl,--sysroot=/" MAJOR_IN_MKDEV = "0" MAJOR_IN_SYSMACROS = "0" MAKESETUP = "./Modules/makesetup" MANDIR = "/public/home/yxcao/anaconda3/envs/Smilei/share/man" MKDIR_P = "/bin/mkdir -p" MODLIBS = "" MODNAMES = "_thread posix errno pwd _sre _codecs _weakref _functools _operator _collections itertools atexit _signal _stat time _locale _io zipimport faulthandler _tracemalloc _symtable xxsubtype" MODOBJS = "Modules/_threadmodule.o Modules/posixmodule.o Modules/errnomodule.o Modules/pwdmodule.o Modules/_sre.o Modules/_codecsmodule.o Modules/_weakref.o Modules/_functoolsmodule.o Modules/_operator.o Modules/_collectionsmodule.o Modules/itertoolsmodule.o Modules/atexitmodule.o Modules/signalmodule.o Modules/_stat.o Modules/timemodule.o Modules/_localemodule.o Modules/_iomodule.o Modules/iobase.o Modules/fileio.o Modules/bytesio.o Modules/bufferedio.o Modules/textio.o Modules/stringio.o Modules/zipimport.o Modules/faulthandler.o Modules/_tracemalloc.o Modules/hashtable.o Modules/symtablemodule.o Modules/xxsubtype.o" MODULE_OBJS = "\" MULTIARCH = "x86_64-linux-gnu" MULTIARCH_CPPFLAGS = "-DMULTIARCH=\"x86_64-linux-gnu\"" MVWDELCH_IS_EXPRESSION = "1" NO_AS_NEEDED = "-Wl,--no-as-needed" OBJECT_OBJS = "\" OPT = "-DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes" OTHER_LIBTOOL_OPT = "" PACKAGE_BUGREPORT = "0" PACKAGE_NAME = "0" PACKAGE_STRING = "0" PACKAGE_TARNAME = "0" PACKAGE_URL = "0" PACKAGE_VERSION = "0" PARSER_HEADERS = "\" PARSER_OBJS = "\ Parser/myreadline.o Parser/parsetok.o Parser/tokenizer.o" PGEN = "Parser/pgen" PGENOBJS = "\ \" PGOBJS = "\" PGO_PROF_GEN_FLAG = "-fprofile-generate" PGO_PROF_USE_FLAG = "-fprofile-use -fprofile-correction" PLATDIR = "" POBJS = "\" POSIX_SEMAPHORES_NOT_ENABLED = "0" PROFILE_TASK = "-m test.regrtest --pgo" PTHREAD_SYSTEM_SCHED_SUPPORTED = "1" PURIFY = "" PY3LIBRARY = "libpython3.so" PYLONG_BITS_IN_DIGIT = "0" PYTHON = "python" PYTHONFRAMEWORK = "" PYTHONFRAMEWORKDIR = "no-framework" PYTHONFRAMEWORKINSTALLDIR = "" PYTHONFRAMEWORKPREFIX = "" PYTHONPATH = ":" PYTHON_FOR_BUILD = "./python -E" PYTHON_FOR_REGEN = "python" PYTHON_HEADERS = "\" PYTHON_OBJS = "\" PY_CFLAGS = "-Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes" PY_CFLAGS_NODIST = "-std=c99 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers" PY_CORE_CFLAGS = "-Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -std=c99 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -I. -I./Include -I/public/home/yxcao/anaconda3/envs/Smilei/include -fPIC -DPy_BUILD_CORE" PY_CPPFLAGS = "-I. -I./Include -I/public/home/yxcao/anaconda3/envs/Smilei/include" PY_FORMAT_SIZE_T = ""z"" PY_LDFLAGS = "-L/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,-rpath=/public/home/yxcao/anaconda3/envs/Smilei/lib -Wl,--no-as-needed -Wl,--sysroot=/" Py_DEBUG = "0" Py_ENABLE_SHARED = "0" Py_HASH_ALGORITHM = "0" QUICKTESTOPTS = "-x test_subprocess test_io test_lib2to3 \" RANLIB = "ranlib" READELF = "readelf" RESSRCDIR = "Mac/Resources/framework" RETSIGTYPE = "void" RUNSHARED = "LD_LIBRARY_PATH=/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3" SCRIPTDIR = "/public/home/yxcao/anaconda3/envs/Smilei/lib" SETPGRP_HAVE_ARG = "0" SGI_ABI = "" SHELL = "/bin/sh" SHLIBS = "-lpthread -ldl -lutil -lrt" SHLIB_SUFFIX = ".so" SIGNED_RIGHT_SHIFT_ZERO_FILLS = "0" SITEPATH = "" SIZEOF_DOUBLE = "8" SIZEOF_FLOAT = "4" SIZEOF_FPOS_T = "16" SIZEOF_INT = "4" SIZEOF_LONG = "8" SIZEOF_LONG_DOUBLE = "16" SIZEOF_LONG_LONG = "8" SIZEOF_OFF_T = "8" SIZEOF_PID_T = "4" SIZEOF_PTHREAD_T = "8" SIZEOF_SHORT = "2" SIZEOF_SIZE_T = "8" SIZEOF_TIME_T = "8" SIZEOF_UINTPTR_T = "8" SIZEOF_VOID_P = "8" SIZEOF_WCHAR_T = "4" SIZEOF__BOOL = "1" SO = ".cpython-37m-x86_64-linux-gnu.so" SOABI = "cpython-37m-x86_64-linux-gnu" SRCDIRS = "Parser Grammar Objects Python Modules Mac Programs" SRC_GDB_HOOKS = "./Tools/gdb/libpython.py" STDC_HEADERS = "1" STRICT_SYSV_CURSES = "/ Don't use ncurses extensions /" STRIPFLAG = "-s" SUBDIRS = "" SUBDIRSTOO = "Include Lib Misc" SYSLIBS = "-lm" SYS_SELECT_WITH_SYS_TIME = "1" TANH_PRESERVES_ZERO_SIGN = "1" TCLTK_INCLUDES = "-I/public/home/yxcao/anaconda3/envs/Smilei/include" TCLTK_LIBS = "-L/public/home/yxcao/anaconda3/envs/Smilei/lib -ltcl8.6 -ltk8.6" TESTOPTS = "" TESTPATH = "" TESTPYTHON = "LD_LIBRARY_PATH=/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3 ./python" TESTPYTHONOPTS = "" TESTRUNNER = "LD_LIBRARY_PATH=/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3 ./python ./Tools/scripts/run_tests.py" TESTTIMEOUT = "1200" THREADOBJ = "Python/thread.o" TIMEMODULE_LIB = "rt" TIME_WITH_SYS_TIME = "1" TM_IN_SYS_TIME = "0" UNICODE_DEPS = "\" UNIVERSALSDK = "" USE_COMPUTED_GOTOS = "0" USE_INLINE = "1" VERSION = "3.7" WANT_SIGFPE_HANDLER = "0" WINDOW_HAS_FLAGS = "1" WITH_DOC_STRINGS = "1" WITH_DTRACE = "0" WITH_DYLD = "0" WITH_LIBINTL = "0" WITH_NEXT_FRAMEWORK = "0" WITH_PYMALLOC = "1" WITH_THREAD = "1" WITH_VALGRIND = "0" X87_DOUBLE_ROUNDING = "0" XMLLIBSUBDIRS = "xml xml/dom xml/etree xml/parsers xml/sax" abiflags = "m" abs_builddir = "/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3" abs_srcdir = "/public/home/yxcao/anaconda3/envs/Smilei/../work/Python-3.7.3" base = "/public/home/yxcao/anaconda3/envs/Smilei" datarootdir = "/public/home/yxcao/anaconda3/envs/Smilei/share" exec_prefix = "/public/home/yxcao/anaconda3/envs/Smilei" installed_base = "/public/home/yxcao/anaconda3/envs/Smilei" installed_platbase = "/public/home/yxcao/anaconda3/envs/Smilei" platbase = "/public/home/yxcao/anaconda3/envs/Smilei" prefix = "/public/home/yxcao/anaconda3/envs/Smilei" projectbase = "/public/home/yxcao/anaconda3/envs/Smilei/bin" py_version = "3.7.9" py_version_nodot = "37" py_version_short = "3.7" srcdir = "/public/home/yxcao/anaconda3/envs/Smilei/lib/python3.7/config-3.7m-x86_64-linux-gnu" userbase = "/public/home/yxcao/.local"
ldd smilei ldd: ./smilei: No such file or directory