Dereplicate rule-specific parameters

Snakemake-Profiles / lsf

Snakemake profile for running jobs on an LSF cluster

MIT License

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Closed mbhall88 closed 3 years ago

mbhall88 commented 3 years ago

Parameters given in the config file are now deduplicated. For instance, if a default for -q is given, and a rule specifies -q also, the rule's value for -q is chosen. Previously, parameters were just concatenated [closes #36]

mbhall88 commented 3 years ago

CI failed due to an f-string being incorrectly added to the snakemake codebase. Rerun after https://github.com/snakemake/snakemake/pull/841 is merged