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Snakemake-Profiles / lsf

Snakemake profile for running jobs on an LSF cluster
MIT License
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`lsf.yaml` settings for specific rules are not used #42

Closed mfansler closed 2 years ago

mfansler commented 2 years ago

I've tried using lsf.yaml to define rule-specific options multiple times over the last year, but it never has worked. Unfortunately, it is always faster to just edit my Snakefile, but I thought I'd post an Issue this time because it really would be more appropriate, vis-à-vis reusability, to have these settings in the YAML. In the most recent attempt, I am trying

__default__:
  - "-W 3:59"

foo: 
  - "-W 24:00"

but all my foo jobs still get created with the default settings. Has anyone else had success using this?

mfansler commented 2 years ago

I recreated my profile with the latest version and it now works. Sorry for the false alarm!