Snakemake-Profiles / slurm

Cookiecutter for snakemake slurm profile
MIT License
126 stars 44 forks source link

Add compatibility for --immediate-submit flag #106

Open GaspardR opened 2 years ago

GaspardR commented 2 years ago

Add support for the snakemake option --immediate-submit, which is useful to queue all your jobs at once so you don't have to wait for queue time between jobs. This addition shouldn't change any compatibility with the current profile, but allows for compatibility with --immediate-submit. This option only works with snakemake >= 7.15.1 since before that, --immediate-submit was broken (see #1851).