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Snakemake-Profiles / slurm

Cookiecutter for snakemake slurm profile
MIT License
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Getting "/bin/sh: slurm-status.py: command not found" error #76

Closed anilthanki closed 2 years ago

anilthanki commented 3 years ago

Hi

I followed the steps mentioned here and created profile. but I am getting "/bin/sh: slurm-status.py: command not found" error.

I am using Snakemake-6.8.0

Thanks

Anil

jdblischak commented 3 years ago

I am getting "/bin/sh: slurm-status.py: command not found" error.

Does your slurm-status.py file have executable permissions? Try making it executable with chmod +x slurm-status.py and re-run your Snakemake pipeline.

If the above doesn't work, please run ls -l on the directory that contains your profile and report its output. That will help us troubleshoot your issue.

percyfal commented 2 years ago

@anilthanki did the suggested solution work out for you?

anilthanki commented 2 years ago

Hi..

Sorry I have started using simple slurm from @jdblischak https://github.com/jdblischak/smk-simple-slurm

And its been working well I guess.

Thanks

Anil