add more option on config.yaml

[sravel]

Hello, Is it possible to add all snakemake option on config.yaml file like the profile lsl? https://github.com/Snakemake-Profiles/lsf/blob/master/%7B%7Bcookiecutter.profile_name%7D%7D/config.yaml

Thanks

[percyfal]

Hi @sravel , are you wondering whether it is possible to add options or whether more options should be listed in the template? If the latter (which I'm assuming), are there any particular options that you feel are missing? I would personally try to keep the list of included options at a minimum though, but I could certainly see including the subset that is used in the lsf profile.

[sravel]

Hi, More options in the config.yaml profile file could be cool. At the moment I add manually jobs, use-conda and use-singularity slurm options which are really needed.

Here slurm config.yaml

restart-times: 3
jobscript: "slurm-jobscript.sh"
cluster: "slurm-submit.py"
cluster-status: "slurm-status.py"
max-jobs-per-second: 1
max-status-checks-per-second: 10
local-cores: 1
latency-wait: 60

and here from lst

latency-wait: "{{cookiecutter.latency_wait}}"
jobscript: "lsf_jobscript.sh"
use-conda: "{{cookiecutter.use_conda}}"
use-singularity: "{{cookiecutter.use_singularity}}"
printshellcmds: "{{cookiecutter.print_shell_commands}}"
restart-times: "{{cookiecutter.restart_times}}"
jobs: "{{cookiecutter.jobs}}"
cluster: "lsf_submit.py"
cluster-status: "lsf_status.py"
max-jobs-per-second: "{{cookiecutter.max_jobs_per_second}}"
max-status-checks-per-second: "{{cookiecutter.max_status_checks_per_second}}"