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Snitkin-Lab-Umich / regentrans

regentrans: R package for investigating regional pathogen transmission using genomic data
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Allow more flexibility when `get_pair_types()` used as input #33

Open zenalapp opened 3 years ago

zenalapp commented 3 years ago

Check that correct columns are there and subset to those, but allow other columns to be present (e.g. users might on ST or other information as additional columns).

This mainly means updating check_snv_dists(), I think.