chore: Update readme and objects rework state

[sfc-gh-asawicki]

• Update list of essential objects rework
• Update the known issues for the finished objects
• Fix the database behavior
• Add logging
• Fix formatting and linter problems
• Add (unfinished) list of the unfinished topics

[github-actions[bot]]

Integration tests failure for 934613678cc88093715d97e4037c5e8e5390452d