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Social-Evolution-and-Behavior / anTraX

anTraX: high throughput tracking of color-tagged insects
https://antrax.readthedocs.io/
GNU General Public License v3.0
17 stars 3 forks source link

Installation help needed #2

Open ohmycricket opened 3 years ago

ohmycricket commented 3 years ago

Hi! I would like to use your nice tool to track some crickets. I am having trouble installing anTraX on my macbook pro with macOS Big Sur v11.1. After I changed the bash profile and ran "antrax configure" I get the message "-bash: antrax: command not found". I tried both with full matlab installation and MCR, both didn't work. Did I get the paths wrong? Or does this have to do with the bash to zsh transition (https://support.apple.com/en-us/HT208050)? Thanks !

export ANTRAX_MCR=/Applications/MATLAB/MATLAB_Runtime/v96 export ANTRAX_PATH=/Users/lavn0007/anTraX export ANTRAX_USE_MCR=True

asafgal commented 3 years ago

Hi, thanks for trying out anTraX!

The 'antrax' command is installed together with the python package, so it should be accessible in your environment after you run "pip install" on the package. It should not care about the shell you run in, and it does not depend on the bash profile.

Let me start with the most basic questions:

  1. Did you run the 'pip install', and did it finish properly?
  2. Are you running the antrax command from within the same environment you installed in? E.g. a conda or virtualenv?