Open lizimai opened 2 years ago
Hi Zimai, sorry for the delayed reply. Just to make sure I got your problem right: the mat file is ok after step 1 (did you try loading it manually to matlab?), but while running step 2 the file cannot be loaded and get corrupted?
Hi Asaf, sorry that I also lost track. Indeed this is the case. I also did try loading it manually to matlab after step 1 and it worked.
Not sure what can be the issue. My suggestion is to try running step two in debug mode, and slowly converge on the problematic point where the file gets corrupted.
Hi Asaf, thanks again for your response! Could you tell how to run the step in debug mode? I cannot find it in the documentation.
@lizimai In case it's still relevant, one way to turn on the debug mode is to run the following command in the terminal window before you execute the antrax command:
export ANTRAX_DEBUG_MODE=True
Hi! I am running antrax solve step 2 and encountering the problem that some graphs cannot be load. I have 6 colonies in each movie. The previous steps: track and classification were all normal.
My command for step 2:
The graph did exists and the size of the graph seems normal, however after solve step 2 the file turns empty. Graph file before solve step 2 (I duplicated it and saved it in another folder)
Not all colonies failed in the solve step 2, for example colony 1 were finished.
The error message in matlab_solve_g_1_c_3.log