search

SofiaShapiro / bsmap

Automatically exported from code.google.com/p/bsmap
0 stars 0 forks source link

Segmentation fault #4

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Here is my simple test to run your BSMAP. Could you tell me why
"Segmentation fault" happened?

bsmap -a t1.fa -d t1.fa -o t1_test

t1.fa
-------------------------------------------------
>1
TTATTATTTATTATTTTTTTTTTATTTTTTTTTTATATTATTTTAGT
>2
TAAAAAATTAAAATAAAAATAATGATTGAGGGAGTGTGGTT
>3
TTATTATTTATTATTTTTTTTTTATTTTTTTTTTATATTATTTTAGT
>4
TTTATTTTATATTTTATTGTTATTAAGAGGTAATATGTA
>5
TGTTATATGTTAGGTATTTTAGTGTAATTATAATAGTTTTTAATTTTGTT

The output is as following:
-------------------------------------------
Start at:  Mon Feb  8 20:27:52 2010
Load in 5 db seqs, total size 224 bp. 0 secs passed
total_kmers: 1048576
Create seed table. 0 secs passed
Single read alignment:
Query: t3  Reference: t3  Output: t3_test
Segmentation fault

Best wishes,

Wei Qu

Original issue reported on code.google.com by quwe...@gmail.com on 8 Feb 2010 at 11:38

zhangaicen commented 4 years ago 
Here is my simple test to run your BSMAP. Could you tell me why
"Segmentation fault" happened?

bsmap -a t1.fa -d t1.fa -o t1_test

t1.fa
-------------------------------------------------
>1
TTATTATTTATTATTTTTTTTTTATTTTTTTTTTATATTATTTTAGT
>2
TAAAAAATTAAAATAAAAATAATGATTGAGGGAGTGTGGTT
>3
TTATTATTTATTATTTTTTTTTTATTTTTTTTTTATATTATTTTAGT
>4
TTTATTTTATATTTTATTGTTATTAAGAGGTAATATGTA
>5
TGTTATATGTTAGGTATTTTAGTGTAATTATAATAGTTTTTAATTTTGTT

The output is as following:
-------------------------------------------
Start at:  Mon Feb  8 20:27:52 2010
Load in 5 db seqs, total size 224 bp. 0 secs passed
total_kmers: 1048576
Create seed table. 0 secs passed
Single read alignment:
Query: t3  Reference: t3  Output: t3_test
Segmentation fault

Best wishes,

Wei Qu

Original issue reported on code.google.com by quwe...@gmail.com on 8 Feb 2010 at 11:38

Hi， now I have met with the same problem, have you resolved it?