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SofieVG / FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data
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view is not checked #15

Closed SamGG closed 6 years ago

SamGG commented 6 years ago

Hi Sophie, I wrote tsne instead of tSNE, and I got an error Error in igraph::plot.igraph(fsom$MST$g, vertex.shape = "star", vertex.label = NA, : object 'lty' not found It seems that view is not controlled. Best. https://github.com/SofieVG/FlowSOM/blob/50daac28a7c4da9ece429727f8143a015e965bcd/R/3_buildMST.R#L1101 https://github.com/SofieVG/FlowSOM/blob/50daac28a7c4da9ece429727f8143a015e965bcd/R/3_buildMST.R#L1152-L1159

SamGG commented 6 years ago

https://github.com/SofieVG/FlowSOM/commit/7d1fcfc45c43b6a5b3d43d1d61f7231bacf91f7a Thanks.