When I build a FlowSOM object on multiple files, then take a subset of it for one file using FlowSOMSubset, then call GetMFIs on that subset, the MFIs are returned just for the subset. But when I do the same thing using GetCVs, the values are unchanged.
Looking at the FlowSOMSubset code, I can see that the $map$medianValues get specifically updated, but I see no similar code for $map$cvValues
I think this is a bug, but I may be misunderstanding something.
When I build a FlowSOM object on multiple files, then take a subset of it for one file using
FlowSOMSubset, then callGetMFIson that subset, the MFIs are returned just for the subset. But when I do the same thing usingGetCVs, the values are unchanged.Looking at the
FlowSOMSubsetcode, I can see that the$map$medianValuesget specifically updated, but I see no similar code for$map$cvValuesI think this is a bug, but I may be misunderstanding something.