SofieVG / FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data
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Add PCA-based codebook initialization. #21

Closed exaexa closed 5 years ago

exaexa commented 5 years ago

This initializes the codebook as a simple, straight PCA-oriented 2-dimensional grid.

The involved changes include a slight update of the initialization logic (initialization functions return point data instead of indices). New usage:

There are a few tunables involved in the process which would probably deserve extra attention:

Thanks a lot! -mk