Closed vivek-verma202 closed 4 years ago
The issue was:
> sum( is.infinite(assay(sce, "exprs")) )
[1] 79
> mean( colSums( is.infinite(assay(sce, "exprs")) ) > 0)
[1] 5.214521e-06
It was fixed by:
sce <- filterSCE(sce, colSums(is.infinite(assay(sce, "exprs"))) == 0)
Detailed troubleshooting is here
Hi Sofie, Thank-you for FlowSOM! I was able to successfully run FlowSOM on the raw data but failed when the fcs files were normalized using CytoNorm. I believe, this error is because of introductions of NAs. How can I debug / circumvent this?
By default,
am using R v4.0.0 and FlowSOM v1.20.0
Thanks a lot! Vivek